Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq347 322 1e-83 seq367 107 5e-19 >seq347 Length=3601 Score = 322 bits (356), Expect = 1e-83 Identities = 622/910 (68%), Gaps = 16/910 (2%) Strand=Plus/Minus Query 21735 TAACAAGTAGCGAGGTCTCTGTTTAACTTCGGTATAAATCCGGCCAATGTACTCGCCCAA 21794 ||||| || | |||||| | ||| ||| |||| || || ||||| || || |||| Sbjct 2871 TAACA--TATCTAGGTCTGTTTTTTGTTTCAATATATATTCGTCCAATATATTCACCCAG 2814 Query 21795 AACTCCGATACCAATGAGCTGCACACCACCGAGAAAAAGTATTGATACCAGCAATGATGG 21854 || |||||||| || | ||||| ||||| | ||| || || | ||||| ||||||||| Sbjct 2813 CACCCCGATACCGATTAATTGCACTCCACCAATAAATAGAATGGCTACCATCAATGATGG 2754 Query 21855 ATAACCGCGCACAGGATTCCCGAATGCAAGCGTATCAATGATCATCCAGGCACCGTACAG 21914 |||||| | || || || || ||| | | |||| ||||||| || || || Sbjct 2753 ATAACCTGGGACTGGGTTACCAAATAGTAATTTGTCAACCGTCATCCATAGGCCATATAG 2694 Query 21915 GAAAGCCAGGCCTGCAACGA-AC--AGGCCAATGTACGTCCACATGCGTAACGGAAATGT 21971 |||| || || | ||| || | || || ||||||||||| | ||| || | || Sbjct 2693 AAAAGAAAG---TGAAGCGACACCAAAACCGATATACGTCCACATTCTTAAAGGGATAGT 2637 Query 21972 TGAGAAGCTGGTAATCCCTTCAAGCGCCAGGTTCCAGAGCTTCCAGCCATTAAACTTAGT 22031 ||| || || ||||||||||| || | ||||| | ||||| | | ||||||| | Sbjct 2636 TGAAAAAGATGTTATCCCTTCAAGAGCTAAATTCCATAATTTCCACCAACTAAACTTGCT 2577 Query 22032 GCTGCCAGCAACACGCTCAGCGCGAGCATATTCAACAACATCTGTACTC--CCACCAACC 22089 || || |||||||| |||| ||| ||| ||| | |||| || | | | Sbjct 2576 TGATCCGGCTGATCGCTCAGCACGAGTGTATGTAAC--CATTTCTACTTTTCCGCTCATC 2519 Query 22090 CAGCTCAATACTCCTTTCATGAACAGGTTGCGTTCTGGTAATAATTTAATGTTTTCCACA 22149 || || | ||||||||||| ||||| ||||| || || | |||| ||||| || Sbjct 2518 CATGACAGCAAACCTTTCATGAAAAGGTTACGTTCAGGCAAACACGTAATATTTTCTACG 2459 Query 22150 ACTCCGCGAGACATTAGTCGGAAATCGCCGACGTTCTCCTCAATCTTTGGATTGCTTATT 22209 ||| | || || || | || || || || || | || ||||| ||| | |||| ||| Sbjct 2458 ACTTCACGTGATATCAAACGAAAGTCACCAACATGTTCTTCAATTTTTTGCGTGCTGATT 2399 Query 22210 TTATTGTGAAGTTTATAGAACCACTCAGCAGTCATGCGCTTCAGTCTTCCGTCTGTAGAA 22269 || ||||| ||| | || ||||| || || || | ||||| | | | || || || | | Sbjct 2398 TTGTTGTGTAGTCTGTAAAACCATTCTGCCGTTTTTCGCTTTAATTTCCCATCAGTCGTA 2339 Query 22270 CGGTCTGAGCGCTTAGCCAGTACCATATCAGCACCTGCCTGCCACTTTTCAATAAGATGA 22329 ||||| ||| ||||||||||| | |||||||||||| ||||||| ||||| | || Sbjct 2338 CGGTCAATGCGTTTAGCCAGTACAACATCAGCACCTGCTCGCCACTTCTCAATCATCTGT 2279 Query 22330 GGGATAACCTCAATCGGGTCCTGCAGATCGACATCAATAGGAATTACAGCATCGCCGCTT 22389 || || | | | ||| || | | ||| |||||||| | || | ||||| || | Sbjct 2278 GGTATGATATTTAACGGATCTTATAAATCTACATCAATGGATATAATTGCATCTCCAGTG 2219 Query 22390 GCATGGTCTAACCCTGCAAATAAGGCTGGTTCTTTACCAAAGTTGCGTGTAAA--TGACA 22447 ||||| ||||| ||||| || | || ||||||||||||||||| || ||||| ||| | Sbjct 2218 GCATGTTCTAATCCTGCGAAAAGTGCAGGTTCTTTACCAAAGTTTCGAGTAAAGCTGATA 2159 Query 22448 GCGGAACAACTAGCGGGTCTGAAACAGCCAGCGCGTTAATAATTGACTCTGTGGCATCTT 22507 || ||| | || || || | | | | ||||| | ||| || ||| Sbjct 2158 GC--CTTAACCATTGGATCAGATATTTCTAATACATTAATCAAGCTCTCAGTATTGTCTG 2101 Query 22508 TACTTCCGTCATTTATGAATACAATTTCTACTTCATATGGCTTCAACTCTTGGAATTCAC 22567 |||| || ||||| ||||| || | |||| | |||| | || | |||| | ||||| | Sbjct 2100 TACTACCATCATTAATGAACACTACCTCTATATTATATTGATTTAGCTCTGGAAATTCTC 2041 Query 22568 GTACCGTTTTATAGAAAACAGGTATCGCTTCTTCTTCATTGAAGACAGGAACGACAAGAG 22627 ||||| |||||| |||| ||||| | || ||||||||| || ||||| || || | | Sbjct 2040 TTACCGATTTATAAAAAATCGGTATGGATTTTTCTTCATTAAAAACAGGGACAACTAACG 1981 Query 22628 ATATTTTCAT 22637 | || ||||| Sbjct 1980 AAATCTTCAT 1971 >seq367 Length=84945 Score = 107 bits (118), Expect = 5e-19 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 14121 GACTTTGAAGCCCGGCAACGGGCGGCGCGGACGGATGAAACCACCTATGTGGTGCAGGGC 14180 || |||||||| | |||||||| || | || || |||||||||||| || |||||| Sbjct 9627 GAATTTGAAGCACAACAACGGGCCGCCAGAACCGAAGAAACCACCTATACCGTACAGGGC 9686 Query 14181 TGGCGACAGGGTAACGGTACGCTGTGGCAGCCCAACCAGCGGGTGATTGTCTTTGATCCG 14240 ||||| || ||| |||| | |||||| | || |||||||| || || |||||||| || Sbjct 9687 TGGCGGCAAGGTGACGGCAGTCTGTGGAAACCTAACCAGCGAGTTATCGTCTTTGACCCC 9746 Query 14241 GTCTGTGGTTTCGACAATACCGAACTG 14267 || | ||||| |||||| |||||| Sbjct 9747 GTGTTAGGTTTTAACAATAGGGAACTG 9773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127101394844640