Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_022749.1
Length=39758
Score E
Sequences producing significant alignments: (Bits) Value
seq347 322 1e-83
seq367 107 5e-19
>seq347
Length=3601
Score = 322 bits (356), Expect = 1e-83
Identities = 622/910 (68%), Gaps = 16/910 (2%)
Strand=Plus/Minus
Query 21735 TAACAAGTAGCGAGGTCTCTGTTTAACTTCGGTATAAATCCGGCCAATGTACTCGCCCAA 21794
||||| || | |||||| | ||| ||| |||| || || ||||| || || ||||
Sbjct 2871 TAACA--TATCTAGGTCTGTTTTTTGTTTCAATATATATTCGTCCAATATATTCACCCAG 2814
Query 21795 AACTCCGATACCAATGAGCTGCACACCACCGAGAAAAAGTATTGATACCAGCAATGATGG 21854
|| |||||||| || | ||||| ||||| | ||| || || | ||||| |||||||||
Sbjct 2813 CACCCCGATACCGATTAATTGCACTCCACCAATAAATAGAATGGCTACCATCAATGATGG 2754
Query 21855 ATAACCGCGCACAGGATTCCCGAATGCAAGCGTATCAATGATCATCCAGGCACCGTACAG 21914
|||||| | || || || || ||| | | |||| ||||||| || || ||
Sbjct 2753 ATAACCTGGGACTGGGTTACCAAATAGTAATTTGTCAACCGTCATCCATAGGCCATATAG 2694
Query 21915 GAAAGCCAGGCCTGCAACGA-AC--AGGCCAATGTACGTCCACATGCGTAACGGAAATGT 21971
|||| || || | ||| || | || || ||||||||||| | ||| || | ||
Sbjct 2693 AAAAGAAAG---TGAAGCGACACCAAAACCGATATACGTCCACATTCTTAAAGGGATAGT 2637
Query 21972 TGAGAAGCTGGTAATCCCTTCAAGCGCCAGGTTCCAGAGCTTCCAGCCATTAAACTTAGT 22031
||| || || ||||||||||| || | ||||| | ||||| | | ||||||| |
Sbjct 2636 TGAAAAAGATGTTATCCCTTCAAGAGCTAAATTCCATAATTTCCACCAACTAAACTTGCT 2577
Query 22032 GCTGCCAGCAACACGCTCAGCGCGAGCATATTCAACAACATCTGTACTC--CCACCAACC 22089
|| || |||||||| |||| ||| ||| ||| | |||| || | | |
Sbjct 2576 TGATCCGGCTGATCGCTCAGCACGAGTGTATGTAAC--CATTTCTACTTTTCCGCTCATC 2519
Query 22090 CAGCTCAATACTCCTTTCATGAACAGGTTGCGTTCTGGTAATAATTTAATGTTTTCCACA 22149
|| || | ||||||||||| ||||| ||||| || || | |||| ||||| ||
Sbjct 2518 CATGACAGCAAACCTTTCATGAAAAGGTTACGTTCAGGCAAACACGTAATATTTTCTACG 2459
Query 22150 ACTCCGCGAGACATTAGTCGGAAATCGCCGACGTTCTCCTCAATCTTTGGATTGCTTATT 22209
||| | || || || | || || || || || | || ||||| ||| | |||| |||
Sbjct 2458 ACTTCACGTGATATCAAACGAAAGTCACCAACATGTTCTTCAATTTTTTGCGTGCTGATT 2399
Query 22210 TTATTGTGAAGTTTATAGAACCACTCAGCAGTCATGCGCTTCAGTCTTCCGTCTGTAGAA 22269
|| ||||| ||| | || ||||| || || || | ||||| | | | || || || | |
Sbjct 2398 TTGTTGTGTAGTCTGTAAAACCATTCTGCCGTTTTTCGCTTTAATTTCCCATCAGTCGTA 2339
Query 22270 CGGTCTGAGCGCTTAGCCAGTACCATATCAGCACCTGCCTGCCACTTTTCAATAAGATGA 22329
||||| ||| ||||||||||| | |||||||||||| ||||||| ||||| | ||
Sbjct 2338 CGGTCAATGCGTTTAGCCAGTACAACATCAGCACCTGCTCGCCACTTCTCAATCATCTGT 2279
Query 22330 GGGATAACCTCAATCGGGTCCTGCAGATCGACATCAATAGGAATTACAGCATCGCCGCTT 22389
|| || | | | ||| || | | ||| |||||||| | || | ||||| || |
Sbjct 2278 GGTATGATATTTAACGGATCTTATAAATCTACATCAATGGATATAATTGCATCTCCAGTG 2219
Query 22390 GCATGGTCTAACCCTGCAAATAAGGCTGGTTCTTTACCAAAGTTGCGTGTAAA--TGACA 22447
||||| ||||| ||||| || | || ||||||||||||||||| || ||||| ||| |
Sbjct 2218 GCATGTTCTAATCCTGCGAAAAGTGCAGGTTCTTTACCAAAGTTTCGAGTAAAGCTGATA 2159
Query 22448 GCGGAACAACTAGCGGGTCTGAAACAGCCAGCGCGTTAATAATTGACTCTGTGGCATCTT 22507
|| ||| | || || || | | | | ||||| | ||| || |||
Sbjct 2158 GC--CTTAACCATTGGATCAGATATTTCTAATACATTAATCAAGCTCTCAGTATTGTCTG 2101
Query 22508 TACTTCCGTCATTTATGAATACAATTTCTACTTCATATGGCTTCAACTCTTGGAATTCAC 22567
|||| || ||||| ||||| || | |||| | |||| | || | |||| | ||||| |
Sbjct 2100 TACTACCATCATTAATGAACACTACCTCTATATTATATTGATTTAGCTCTGGAAATTCTC 2041
Query 22568 GTACCGTTTTATAGAAAACAGGTATCGCTTCTTCTTCATTGAAGACAGGAACGACAAGAG 22627
||||| |||||| |||| ||||| | || ||||||||| || ||||| || || | |
Sbjct 2040 TTACCGATTTATAAAAAATCGGTATGGATTTTTCTTCATTAAAAACAGGGACAACTAACG 1981
Query 22628 ATATTTTCAT 22637
| || |||||
Sbjct 1980 AAATCTTCAT 1971
>seq367
Length=84945
Score = 107 bits (118), Expect = 5e-19
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 14121 GACTTTGAAGCCCGGCAACGGGCGGCGCGGACGGATGAAACCACCTATGTGGTGCAGGGC 14180
|| |||||||| | |||||||| || | || || |||||||||||| || ||||||
Sbjct 9627 GAATTTGAAGCACAACAACGGGCCGCCAGAACCGAAGAAACCACCTATACCGTACAGGGC 9686
Query 14181 TGGCGACAGGGTAACGGTACGCTGTGGCAGCCCAACCAGCGGGTGATTGTCTTTGATCCG 14240
||||| || ||| |||| | |||||| | || |||||||| || || |||||||| ||
Sbjct 9687 TGGCGGCAAGGTGACGGCAGTCTGTGGAAACCTAACCAGCGAGTTATCGTCTTTGACCCC 9746
Query 14241 GTCTGTGGTTTCGACAATACCGAACTG 14267
|| | ||||| |||||| ||||||
Sbjct 9747 GTGTTAGGTTTTAACAATAGGGAACTG 9773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 127101394844640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |