Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq2 120 5e-22 seq116 109 9e-19 seq32 105 1e-17 >seq2 Length=5618958 Score = 120 bits (132), Expect = 5e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| | || || ||||| |||||| | || || || | | || Sbjct 3064097 TGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCTTCCG 3064038 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| ||||||| || ||||| || ||||||||||||||| || ||||||| Sbjct 3064037 ACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGATCAAC 3063978 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || || || ||||| || ||| | |||||| | || ||||| | Sbjct 3063977 AACGTTTGATATTCGCTGGCAAGCAATTGGAAGATGGGCGCACGTTATCCGACTATAACA 3063918 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTA 146240 ||||||| || ||||| | || || ||| Sbjct 3063917 TACAAAAGGAGTCGACCTTGCACTTGGTA 3063889 >seq116 Length=862150 Score = 109 bits (120), Expect = 9e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || ||||||||||||| || ||||| |||||| | || || |||| | Sbjct 474106 TGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCATCGG 474165 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| ||||||| ||| |||||| ||| ||| ||||| ||||| || ||||| | Sbjct 474166 ATACTATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGATCAGC 474225 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATT 146179 || | | |||||||| || || ||||| Sbjct 474226 AACGTTTGATTTTTGCTGGCAAGCAATT 474253 Score = 109 bits (120), Expect = 9e-19 Identities = 167/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || ||||| || || ||||| || || | || || || | || Sbjct 481656 TGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGCCATCCG 481715 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | ||||| |||| |||||| ||| ||||||||| | ||||| ||||||| Sbjct 481716 ACACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCAGATCAAC 481775 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || ||||| || ||||| || || || | || | | || || || | Sbjct 481776 AACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGACTACAACA 481835 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATAAATATT 146269 | || ||||||||||| ||||||| || ||||| || | || || | ||||||| Sbjct 481836 TTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGCATGCAAATATT 481893 >seq32 Length=1919080 Score = 105 bits (116), Expect = 1e-17 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || ||||||| |||| || || || || ||| |||| || |||| | Sbjct 39418 TGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCGG 39359 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| ||||||||||| || || || ||||| || ||||||||||| || | Sbjct 39358 ACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAGC 39299 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || || | ||||| || || || ||||| || ||| | || || | |||||||||| Sbjct 39298 AACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTATAATA 39239 Query 146212 TACAAAAAGAATCGAC 146227 | ||||||||||| || Sbjct 39238 TTCAAAAAGAATCCAC 39223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786149438459920