Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq32 181 8e-41 seq116 167 2e-36 seq2 147 2e-30 seq66 96.9 3e-15 >seq32 Length=1919080 Score = 181 bits (200), Expect = 8e-41 Identities = 183/233 (79%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG- 29617 ||| || | |||||||||||| | ||| | ||||||||||||||||| |||||||| | Sbjct 39192 TCCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGA 39251 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 |||| ||||| ||| || | ||| || ||||| | ||||||| |||||| || || | Sbjct 39252 CAAT-GTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTG 39310 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 |||| ||||||||||| || ||| || | ||| ||| |||| | |||||| || |||| Sbjct 39311 GAATTCCCTCTTTGTCCTG-AATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCG 39369 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || |||||||| || || ||||| |||| |||||| ||||| |||||||| || Sbjct 39370 ACCTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 39422 >seq116 Length=862150 Score = 167 bits (184), Expect = 2e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 ||||| | | ||||| |||||| ||||| || ||||| ||||| ||||| ||||| | | Sbjct 484312 CCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 484253 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| |||| ||| || | |||||||||||| | ||||| | ||||| || || || Sbjct 484252 AATG-TGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 484194 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||| || ||||| || | |||| ||| || |||| | |||||| || ||||||| Sbjct 484193 AATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTAC 484134 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| | ||| || ||||| || || || |||||||||||||| |||||| Sbjct 484133 TTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCATT 484085 Score = 138 bits (152), Expect = 9e-28 Identities = 173/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | |||||| | |||||||| || || |||||||| |||||||| || || | Sbjct 481881 CCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAG 481822 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| || || | |||||||||||| | ||||| | ||| ||||| || || Sbjct 481821 AGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 481762 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGA-CAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 | || ||||| ||||| |||||| |||| | || | || | |||||| || | || || Sbjct 481761 ACTCCTTCTTTATCTTG-AATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAAC 481703 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAAAA 29793 || | || |||||||| ||||| || || || || || ||||||||||||||| Sbjct 481702 CTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTTAAAA 481648 Score = 134 bits (148), Expect = 1e-26 Identities = 122/151 (81%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 29640 TTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAA 29699 ||| ||||||||| | ||||| | ||||||||| || |||||||| || || ||||| || Sbjct 474251 TTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTG-AA 474193 Query 29700 TTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGC 29758 |||| | ||| ||| |||| | ||| || || |||| ||||| | ||| |||||||||| Sbjct 474192 TTTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTGC 474133 Query 29759 CAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||||| ||||| ||||| || |||||||| Sbjct 474132 CAGTTAATGTTTTTACAAAGATTTGCATTTT 474102 Score = 105 bits (116), Expect = 5e-18 Identities = 121/160 (76%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAG 29629 ||||| ||||||||| | |||||||| ||||| ||||| ||||| | ||||| |||| Sbjct 484073 ACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATG-TGCGGC 484015 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | |||||||||||| | ||||| | ||||| || || |||||||| || | Sbjct 484014 CATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCT 483955 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGA 29729 |||| || | |||| ||| || |||| | ||| || || Sbjct 483954 TGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGA 483915 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTG 29724 ||||| || || |||||||| || ||||| || | |||| ||| || |||| | ||| Sbjct 482004 TGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTA 481945 Query 29725 TCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGC 29784 || || |||||| || | ||| || ||||| || || || |||||||||||||| ||| Sbjct 481944 TCTGATGATTCTACCTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTAACAAATATTTGC 481885 Query 29785 AT 29786 || Sbjct 481884 AT 481883 >seq2 Length=5618958 Score = 147 bits (162), Expect = 2e-30 Identities = 166/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| || | || || || ||||| |||||||| || | | ||||| Sbjct 3063883 ACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGCCC 3063942 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | ||| |||||||| ||||||| | ||| ||||| || ||||| || ||||| Sbjct 3063943 ATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTT 3064002 Query 29691 GTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || |||||| | |||||| |||| | |||||| ||| | || ||||| | ||| | Sbjct 3064003 ATCCTG-AATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAA 3064061 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 ||||||||||||| | |||||||| || || |||||||| Sbjct 3064062 TAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTT 3064101 >seq66 Length=1297373 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 ||||||| |||||||| || || || | ||||| |||||||| ||| | |||| | Sbjct 241559 AAACGCAAAACCAAATGGAGAGTCGAACCCTTTTGTATGTTATAGTCCATTAACGTGCAA 241500 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || || || ||||| ||||| ||||| | |||||| || || || || || Sbjct 241499 CCATCTTCCAGCTGCTTGCCGGCATAAATCAAACGGCGCTGATTTGGTGGGATGCCGTCC 241440 Query 29689 TTGTCTTGTAATTTTTGTTTGACA-GTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 || || || ||| || |||| | ||||| | ||| || | |||| | || | ||| Sbjct 241439 TTATCCTG-AATCTTGGTTTTAATCGTTTCAATAGTATCGGTCGGTTCGGCATCTAAAGT 241381 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || | ||| ||||| ||||| || || ||||||||||| Sbjct 241380 GAGGGTATGGCCCGTTAACGTTTTCACGAAAATCTGCATTTT 241339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385211096673366