Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq116 167 2e-36 seq32 127 2e-24 seq162 107 2e-18 seq2 100 3e-16 seq66 86.0 6e-12 >seq116 Length=862150 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | |||||| || || |||| |||||||| ||||||||||||||||| | Sbjct 484312 CCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 484253 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| ||||| | ||||| |||||| |||||| ||| ||||| || ||||| Sbjct 484252 AATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 484193 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || ||||| ||||| |||||| ||| | | ||| | ||||||| ||||||||| Sbjct 484192 ATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACT 484133 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | ||| | ||| || |||||||| ||||| || ||||||||||| Sbjct 484132 TCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || || || | |||||| || ||||| | ||| ||||| ||||||||||||||||| | Sbjct 484084 CCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGAC 484025 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| ||||| | ||||| |||||| |||||| ||| ||||| || ||||| Sbjct 484024 AATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 483965 Query 137305 ATGCCTTCTTTGTC 137318 || ||||| ||||| Sbjct 483964 ATACCTTCCTTGTC 483951 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 137265 TTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAAT 137324 ||| || |||||| | |||| |||||||||||| || || || ||||| || || ||| Sbjct 474251 TTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGAAT 474192 Query 137325 TTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCC 137384 ||| ||| | | ||| | || || | ||||| ||||| | ||| | || ||||| Sbjct 474191 TTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTGCC 474132 Query 137385 GGTCAATGTTTTTACGAATATTTGCAT 137411 || ||||||||||| || |||||||| Sbjct 474131 AGTTAATGTTTTTACAAAGATTTGCAT 474105 >seq32 Length=1919080 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || ||||| ||||||| || | ||| | || ||||||||||| || || |||||| | Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 39252 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| ||||| | ||| || ||||| | |||| |||||||| ||||| || Sbjct 39253 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 39312 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || |||||||| ||| || ||||| | ||| | ||||| | |||||| || Sbjct 39313 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 39372 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 |||| ||| | |||||||| || | |||||||| || || |||||| Sbjct 39373 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATA 39420 >seq162 Length=626193 Score = 107 bits (118), Expect = 2e-18 Identities = 431/674 (64%), Gaps = 15/674 (2%) Strand=Plus/Minus Query 150779 GGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 150838 || ||||| ||||| ||||| || ||||| || || | ||||| ||||| || Sbjct 500530 GGCTCAAAAGACTCATTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCT 500471 Query 150839 ACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCC 150898 || ||||| ||||| || | ||| || ||| || | |||| | | ||||| | | Sbjct 500470 ACTAGCAAGGAATTGCGCACTCCATAACTTTTAATGTCGCTTTTAAGATCCGACCAATTC 500411 Query 150899 CATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTG 150958 |||| ||| || ||| ||||| ||| ||||| | || ||| || || Sbjct 500410 CATAGATCAGTAGGCGTTTTATCCCACATATCATATTGAAGGATAGCTTTACTAACTGGA 500351 Query 150959 CTACCGGCAAACGTGCTATAAGGCTCACTA-ACAGAT--GCCAGTTCGTAACTGGCCTCG 151015 ||||| || | || || || ||| | | | |||| ||| |||| | || Sbjct 500350 CTACCTTCATATGTTTCGTACGG---ACTGTATTGTTTGGCCAATTCACAACTACCTTCT 500294 Query 151016 AGCGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTC 151075 | || | | ||| | |||||| |||||||||||| || || | ||| ||||| Sbjct 500293 AAGTCACCGTAATATATTGTTTCAAAAATTTGTTTATTTAAGCGAGCAGCATTTTCGCTT 500234 Query 151076 ACGTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGATG 151135 | || || |||| | || | ||| || || || ||||| | ||||| || || Sbjct 500233 TCATAGGGGTAACGCATTAAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATT 500174 Query 151136 GGACGATGGCGCATATTAGAtttttttGCAGTTTCA---ATAGGGTAGAAATTGCGATCA 151192 |||||||| || | |||||| ||| | | |||| | || ||| ||||| ||| Sbjct 500173 GGACGATGACGAAAATTAGACTTTCTGG---TTTCCGGCAACGGATAGTAATTGATATCG 500117 Query 151193 ATAATTTTATTCAAACTATTCACTACATGTTTGACCACAGTGTGCAATAGTTGAAAATCA 151252 || ||||| || | | || || | | || | || | | | ||||||||| Sbjct 500116 ATTATTTTGTTGAGGTTCTTTGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCA 500057 Query 151253 AAAG---TATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCA 151309 | |||| | | | | | |||| | ||||| || |||| ||| || || || Sbjct 500056 TATTGTTTATCTGTCGTTACAAACATATTCAACGCAATTGATGCTAAATTGCAAACTGCT 499997 Query 151310 GTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAAT 151369 |||| || | || ||||| || ||||| | |||||| || ||||||||||| Sbjct 499996 ATTTCTTCAGCCGACGTATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTG 499937 Query 151370 CCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTG 151429 || ||| |||||| |||||||| || ||||| || ||||| | |||||| || || Sbjct 499936 CCAACATTCTGTTGATTACTTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTT 499877 Query 151430 CCGGTTTCGGCTTG 151443 ||||| || |||| Sbjct 499876 CCGGTCTCTACTTG 499863 >seq2 Length=5618958 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | || || || | || || || ||||||||||| || ||| Sbjct 3063871 GCCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGA 3063930 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | |||| | ||||| | ||| || ||||| | |||| |||||| ||||| ||||| Sbjct 3063931 TAACGTGCGCCCATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGG 3063990 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 ||||||||||| || |||||| || | | ||| | ||||| | || || || Sbjct 3063991 AATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAAC 3064050 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| | ||| | || ||||| || | ||||| ||||| |||||||| Sbjct 3064051 TTCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCAT 3064098 >seq66 Length=1297373 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 137192 GTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC 137251 ||||||||||||| ||||| | || || | ||||||||||| || || | | |||| Sbjct 241561 GTAAACGCAAAACCAAATGGAGAGTCGAACCCTTTTGTATGTTATAGTCCATTAACGTGC 241502 Query 137252 TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTT 137311 ||||| || || || || ||||| |||| ||| |||||| || || ||||| | Sbjct 241501 AACCATCTTCCAGCTGCTTGCCGGCATAAATCAAACGGCGCTGATTTGGTGGGATGCCGT 241442 Query 137312 CTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAG 137371 | || || ||| || ||| | | ||| | || || || ||||| | || | || Sbjct 241441 CCTTATCCTGAATCTTGGTTTTAATCGTTTCAATAGTATCGGTCGGTTCGGCATCTAAAG 241382 Query 137372 TCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 | | || | ||| || || ||||| ||||| || ||||| Sbjct 241381 TGAGGGTATGGCCCGTTAACGTTTTCACGAAAATCTGCAT 241342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488533459663200