Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_023719.1
Length=497513
Score E
Sequences producing significant alignments: (Bits) Value
seq889 298 2e-75
seq771 174 5e-38
>seq889
Length=2978
Score = 298 bits (330), Expect = 2e-75
Identities = 765/1139 (67%), Gaps = 43/1139 (4%)
Strand=Plus/Minus
Query 188458 TGTTCATTCTGTGGGAAGCCGCAAGAGCACGTTCGTAAATTAGTTGCAGGTCCAAATGTT 188517
||||| || ||||| || ||| | | || | ||||||| |||||||| ||
Sbjct 2562 TGTTCCTTTTGTGGAAAAAACCAAAATGAAGTACATAAATTAATTGCAGGTATGTCAGTA 2503
Query 188518 CACATTTGTGATGAATGTATTAGTTTATGTTCTGAAATTGTTGAAGAGGAATTAGAGACA 188577
| ||||| || |||||||||| |||||| | | ||||| || | ||| | | |||
Sbjct 2502 TATATTTGCGACGAATGTATTATGTTATGTCATAATATTGTAAAAAAAGAAGCACA-ACA 2444
Query 188578 ACTGAAGAAT-TCTCAATGGA---AGATGTT--CCACTTCCAAATGAAATTGTTGAATTA 188631
| | ||||| | | ||| | | || ||| ||| ||||||| || | |||
Sbjct 2443 ATT--AGAATGTAACTATGATTTTATTTCTTTACCAAAACCACATGAAATATTT-AGTTA 2387
Query 188632 TT-AGATAATCATATTATTGGACAAGAAAAAGC--AAAACGTCAATTAGCTGTATCAGTT 188688
|| | ||| | || |||||||||||||||||| |||| || |||| | || |||||
Sbjct 2386 TTTAAATAGTTATGTTATTGGACAAGAAAAAGTTAAAAAAGT--ATTATCGGTGTCAGTA 2329
Query 188689 TATAATCATTATAAGCGCATTAATGCTCTTAATGaaaaatcaaaaaatgatgatggagta 188748
|||||||||||||| | || | || ||||| ||||| | || || || |
Sbjct 2328 TATAATCATTATAAAAAGTTAAAA--TATT--TGAAATTGCAAAATA--AT-ATTGAATT 2276
Query 188749 aagatcaaaaaaTCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTT 188808
| || ||| ||| || | ||| |||| || |||||| || |||||| ||||
Sbjct 2275 AGGA-----AAAAGTAACGTATTGTTAATTGGTCCAACTGGTAGCGGAAAAACACTATTA 2221
Query 188809 GCTCAAACATTGGCT-GATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTT 188867
||| ||||||| || ||| | | | | |||||| | || |||||||| ||| | ||
Sbjct 2220 GCTGAAACATTAGCAAGATTTTTGAAA-GTACCTTTTATAATTTCTGATGCTACTACATT 2162
Query 188868 AACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGC 188927
||| ||||| || ||||| || |||||||| ||||| || | | | ||| | |||
Sbjct 2161 AACGGAAGCCGGATATGTCGGAGAAGATGTAGAAAATATAATACAAAGATTATTACAAAA 2102
Query 188928 AGCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAA 188987
| ||| | |||| || |||| ||| || ||| ||||||| |||||| | |||||
Sbjct 2101 ATGTGACTTTAATATAAAAAAAGCGCAACACGGTATTATATATATTGATGAAATTGATAA 2042
Query 188988 AATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACA 189047
|| ||||||||||||| | |||| ||||| ||||||| ||||| ||||| |||||
Sbjct 2041 GATCTCTAGAAAATCAGACAATCCATCTATTACTAGAGATGTTTCTGGAGAAGGTGTACA 1982
Query 189048 GCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCG 189107
||||| ||||||||| | || |||||||||||||| || ||| |||||||| |
Sbjct 1981 ACAAGCATTATTAAAATTAATAGAAGGTACAGTTGCTTCGGTGCCTAAAAAAGGTGGTAG 1922
Query 189108 TAAACACCCTCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGG 189167
||||| ||||| |||||| | || | |||||||| |||| || | ||||| |||
Sbjct 1921 AAAACATCCTCAACAAGAATTTTTTCATGTAGATACATCTAAAATACTCTTTATCTGTGG 1862
Query 189168 TGGAGCGTTTGATGGTCTTGAAAACATTATC-AAGA--GACGCGCTACAAAATCAACTTT 189224
||| || ||| ||| | | || |||||| | || || | |||||| | | |
Sbjct 1861 TGGCGCATTTTCTGGATTAAATAAAATTATCTACGAACGAATCATAACAAAAAATAGTGT 1802
Query 189225 AGGTTTTGATGATAGTGTAGATAAAGTACAAGAAGAAATCAAGGATGACAATAAAGTATT 189284
|| ||| || | |||| ||| | | || |||| | || ||||||| ||||
Sbjct 1801 TGGATTTACTGTTTCAATAGAGAAAAAATCA-AAAAAAT--ATAATAACAATAACTTATT 1745
Query 189285 CCAACATCTTCAACCGCAAGATATTGTTAAGTATGGTTTAATTCCAGAATTTATTGGGCG 189344
| | |||| || ||||| | |||||| ||| ||||| || || ||||| || |
Sbjct 1744 GAACAAAGTTCAGCCTGAAGATTTAATTAAGTTTGGATTAATACCCGAGTTTATAGGAAG 1685
Query 189345 TGTACCAGTAATCGCAACTCTTA-ACAAACTTGATCGAGATGCATTGATTAACATTTTAA 189403
|||| || | | | | ||| | |||| | | | ||| | ||| ||||||
Sbjct 1684 ATTACCTATACTATC-AGTATTAGAAGAACTAAACATATCAGAATTAACTAAAGTTTTAA 1626
Query 189404 CTGAGCCGCAAAACGCTATCATTAAACAATATCAGAAATTGTTAGATA---TGGATGGCG 189460
| || |||| ||| | | ||||| |||| |||| ||| || | || || |
Sbjct 1625 TTTCTCCAAAAAATGCTTTAGTCAAACAGTATC---AATTTTTATTTAACTTAGAAGGAG 1569
Query 189461 TGGAATTAGAATTCCAAAAAGAAGCATTAGAATCAATTGCAGATGAAGCGATTGAACGTA 189520
|||||||||||||| ||||| | ||| || || ||||| | || | | | | |
Sbjct 1568 TGGAATTAGAATTCAAAAAAAATGCACTAATTTCCATTGCCAAACAATCTCTAAGAAGAA 1509
Query 189521 ATACTGGTGCTCGCGGATTACAATCCATTATTGAAAATATTATGTTAGATGTAATGTAT 189579
| ||||| ||||| ||||| || ||||| ||| || || | |||||| ||||||
Sbjct 1508 AAACTGGCGCTCGAGGATTGAGGTCGATTATAGAATATGTTTTATTAGATACGATGTAT 1450
>seq771
Length=5339
Score = 174 bits (192), Expect = 5e-38
Identities = 570/860 (66%), Gaps = 72/860 (8%)
Strand=Plus/Minus
Query 54149 AAGATACCAACCAGCTACTCCAACTTTCCTAAATGCTGGTAGAAGCAGACGCGGAGAAAT 54208
||||| ||||||||||||||||| || |||||| ||||| || ||| ||||||
Sbjct 2818 AAGATTTCAACCAGCTACTCCAACGTTTCTAAATTGTGGTAAAAAACAACGTGGAGAATA 2759
Query 54209 GGTTTCTTGTTTCTTATTAGAAATGGATGATAGCTTGAATTCAATTGGTTTCAATATCAA 54268
| || || || |||||| || || |||| || | || ||||| | || ||
Sbjct 2758 CATATCATGCTTTTTATTACGTATAGAAGATAATATGGAATCCATTGGGCGCGCGATTAA 2699
Query 54269 TACTGCAATGCAATTATCTAAAATTGGCGGCGGCGTTGCCTTAAACCTTTCTAAAC---T 54325
| | || ||||| ||||||||| || || || || | || ||| | ||| |
Sbjct 2698 TGCAGCTTTGCAACTATCTAAAAGAGGAGGAGGAGTATCATT-----TTTATTAACAAAT 2644
Query 54326 TAGAGGAAGAA--AAGAGCAA--ATTAAAGGTATTGATGATGCTGCTTCTGGAGTAGTAC 54381
| || |||| | | ||| |||||| |||| | || |||| ||| | |||
Sbjct 2643 TTAAG--AGAATCAGGGGCACCTATTAAATATATTAAAAATCAATCTTCCGGAATTATAC 2586
Query 54382 CAGTTATGAAACTTTTAGAAGATAGCTTCTCTTATGCTAATCAGCTTGGCCAAAGAAAAG 54441
| |||||||| | ||||||||| || |||||||||||||| | || | || |||
Sbjct 2585 CGATTATGAAAATCTTAGAAGATGCTTTTTCTTATGCTAATCAATTAGGTGCACGACAAG 2526
Query 54442 GCGCTGGAGCTGTTTACTTAAA----CATCTTCCACTGGGATATTATTGAA-TTCTTAGA 54496
| |||||||| || || ||| | |||| ||| |||||| ||||| || |||||
Sbjct 2525 GAGCTGGAGCCGTATATTTACATGCTCATCATCC----TGATATT-TTGAAGTTTTTAGA 2471
Query 54497 TACTAAAAAGATCAATGCTGATGAAAAAGCCAGAATTCAATCTTTATCTATTGG-ATTA- 54554
||||||||| ||||||||||||||| ||||||| || | ||||| | || |||
Sbjct 2470 TACTAAAAAAGAAAATGCTGATGAAAAAACCAGAATAAAAACCCTATCTTTAGGTGTTAT 2411
Query 54555 -ATTGCTGAAAAAATCTTCTTCCAATTAGCAAAAAGAAACGAAGAAATGTATGTTTTTGC 54613
||| |||| | | || || |||||||||||| |||| ||||||||||| | ||| |
Sbjct 2410 CATTCCTGATATTA-CT--TTTCAATTAGCAAAAGAAAACAAAGAAATGTATTTGTTTTC 2354
Query 54614 TCCTCACTCGGTTTACAGAGCTTATGGT-GAACATTTAGATGACATGGATT-TAAATGTT 54671
||| || || | | || |||| | || ||||| | || |||| | | |
Sbjct 2353 TCCATACGATATTGAAAAAGTTTATCATCGACCATTT--TCGGAATTGATTATTAGCGAA 2296
Query 54672 ATGTATGATAAGTTAGTTAAAAACCCAGCTG--TTAAGAAA--CGTAAGTTAAATTTAAC 54727
| ||| |||| ||| | || | || | |||| ||| || || ||||
Sbjct 2295 CTTTATCATAATTTATCTCAAGA--TAGTCGGATTAAAAAAATCGCAA-TTAA------- 2246
Query 54728 TGCTCGCGAAATGCTTATTAAAA--TTGCTATTATTCAATTAGAATCTGGCTACCCTTAT 54785
|| |||| ||| || | |||| | ||| |||||||| ||||| || ||||| |||
Sbjct 2245 TG--CGCGTAATTTTTTTCAAAAATTAGCTGAAATTCAATTTGAATCCGGATACCCATAT 2188
Query 54786 TTTATGTACAAAACTAACGCTAATGATACTCACGCATTAAAAGATATTGGCCAAGTTAAA 54845
|||||| | || || || ||| |||| | | || | |||| || ||||
Sbjct 2187 ATTATGTTCGAAGATACCGTAAATCGTACTAATCC--TA----TTTTTGGGCATATTAAT 2134
Query 54846 ATGAGTAATCTTTGTACGGAAATCTTCCAATTACAAGAGACAT-----CTACTATTAATA 54900
||||||||| | ||| | ||||| || ||| || || || | | ||| || || |
Sbjct 2133 ATGAGTAATTTATGTTCTGAAATTTTACAAGTA-AATAGCCCTTCAGAATACAATGAAGA 2075
Query 54901 ACTATGGTACTGATGATGAAAT--CAAGAGAGATATCAACTGTAATTTAGGTTCATTAAA 54958
|| | | || | |||| || ||| ||||| ||||||||||| || |||||
Sbjct 2074 CTTA----AGTTATAAAAAAATAGGAACAGATATATC--TTGTAATTTAGGATCTTTAAA 2021
Query 54959 TATTGTTAATGTAATGGAAT 54978
||||| |||| |||||||
Sbjct 2020 TATTGCTAATACTATGGAAT 2001
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1591875195896448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |