Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq889 298 2e-75 seq771 174 5e-38 >seq889 Length=2978 Score = 298 bits (330), Expect = 2e-75 Identities = 765/1139 (67%), Gaps = 43/1139 (4%) Strand=Plus/Minus Query 188458 TGTTCATTCTGTGGGAAGCCGCAAGAGCACGTTCGTAAATTAGTTGCAGGTCCAAATGTT 188517 ||||| || ||||| || ||| | | || | ||||||| |||||||| || Sbjct 2562 TGTTCCTTTTGTGGAAAAAACCAAAATGAAGTACATAAATTAATTGCAGGTATGTCAGTA 2503 Query 188518 CACATTTGTGATGAATGTATTAGTTTATGTTCTGAAATTGTTGAAGAGGAATTAGAGACA 188577 | ||||| || |||||||||| |||||| | | ||||| || | ||| | | ||| Sbjct 2502 TATATTTGCGACGAATGTATTATGTTATGTCATAATATTGTAAAAAAAGAAGCACA-ACA 2444 Query 188578 ACTGAAGAAT-TCTCAATGGA---AGATGTT--CCACTTCCAAATGAAATTGTTGAATTA 188631 | | ||||| | | ||| | | || ||| ||| ||||||| || | ||| Sbjct 2443 ATT--AGAATGTAACTATGATTTTATTTCTTTACCAAAACCACATGAAATATTT-AGTTA 2387 Query 188632 TT-AGATAATCATATTATTGGACAAGAAAAAGC--AAAACGTCAATTAGCTGTATCAGTT 188688 || | ||| | || |||||||||||||||||| |||| || |||| | || ||||| Sbjct 2386 TTTAAATAGTTATGTTATTGGACAAGAAAAAGTTAAAAAAGT--ATTATCGGTGTCAGTA 2329 Query 188689 TATAATCATTATAAGCGCATTAATGCTCTTAATGaaaaatcaaaaaatgatgatggagta 188748 |||||||||||||| | || | || ||||| ||||| | || || || | Sbjct 2328 TATAATCATTATAAAAAGTTAAAA--TATT--TGAAATTGCAAAATA--AT-ATTGAATT 2276 Query 188749 aagatcaaaaaaTCTAATGTTCTTTTAGTTGGCCCTACTGGTTCAGGTAAAACATTATTT 188808 | || ||| ||| || | ||| |||| || |||||| || |||||| |||| Sbjct 2275 AGGA-----AAAAGTAACGTATTGTTAATTGGTCCAACTGGTAGCGGAAAAACACTATTA 2221 Query 188809 GCTCAAACATTGGCT-GATATGTTACATGTACCTCTAGCTATCTCTGATGCAACTTCTTT 188867 ||| ||||||| || ||| | | | | |||||| | || |||||||| ||| | || Sbjct 2220 GCTGAAACATTAGCAAGATTTTTGAAA-GTACCTTTTATAATTTCTGATGCTACTACATT 2162 Query 188868 AACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCTTCGTTTAATCCAAGC 188927 ||| ||||| || ||||| || |||||||| ||||| || | | | ||| | ||| Sbjct 2161 AACGGAAGCCGGATATGTCGGAGAAGATGTAGAAAATATAATACAAAGATTATTACAAAA 2102 Query 188928 AGCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATATCGATGAAGTAGATAA 188987 | ||| | |||| || |||| ||| || ||| ||||||| |||||| | ||||| Sbjct 2101 ATGTGACTTTAATATAAAAAAAGCGCAACACGGTATTATATATATTGATGAAATTGATAA 2042 Query 188988 AATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATCTGGCGAAGGAGTACA 189047 || ||||||||||||| | |||| ||||| ||||||| ||||| ||||| ||||| Sbjct 2041 GATCTCTAGAAAATCAGACAATCCATCTATTACTAGAGATGTTTCTGGAGAAGGTGTACA 1982 Query 189048 GCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCCTCCTCAAGGTGGTCG 189107 ||||| ||||||||| | || |||||||||||||| || ||| |||||||| | Sbjct 1981 ACAAGCATTATTAAAATTAATAGAAGGTACAGTTGCTTCGGTGCCTAAAAAAGGTGGTAG 1922 Query 189108 TAAACACCCTCACCAAGAAATGCTTGAAATAGATACAACTAATATCTTGTTTATTCTTGG 189167 ||||| ||||| |||||| | || | |||||||| |||| || | ||||| ||| Sbjct 1921 AAAACATCCTCAACAAGAATTTTTTCATGTAGATACATCTAAAATACTCTTTATCTGTGG 1862 Query 189168 TGGAGCGTTTGATGGTCTTGAAAACATTATC-AAGA--GACGCGCTACAAAATCAACTTT 189224 ||| || ||| ||| | | || |||||| | || || | |||||| | | | Sbjct 1861 TGGCGCATTTTCTGGATTAAATAAAATTATCTACGAACGAATCATAACAAAAAATAGTGT 1802 Query 189225 AGGTTTTGATGATAGTGTAGATAAAGTACAAGAAGAAATCAAGGATGACAATAAAGTATT 189284 || ||| || | |||| ||| | | || |||| | || ||||||| |||| Sbjct 1801 TGGATTTACTGTTTCAATAGAGAAAAAATCA-AAAAAAT--ATAATAACAATAACTTATT 1745 Query 189285 CCAACATCTTCAACCGCAAGATATTGTTAAGTATGGTTTAATTCCAGAATTTATTGGGCG 189344 | | |||| || ||||| | |||||| ||| ||||| || || ||||| || | Sbjct 1744 GAACAAAGTTCAGCCTGAAGATTTAATTAAGTTTGGATTAATACCCGAGTTTATAGGAAG 1685 Query 189345 TGTACCAGTAATCGCAACTCTTA-ACAAACTTGATCGAGATGCATTGATTAACATTTTAA 189403 |||| || | | | | ||| | |||| | | | ||| | ||| |||||| Sbjct 1684 ATTACCTATACTATC-AGTATTAGAAGAACTAAACATATCAGAATTAACTAAAGTTTTAA 1626 Query 189404 CTGAGCCGCAAAACGCTATCATTAAACAATATCAGAAATTGTTAGATA---TGGATGGCG 189460 | || |||| ||| | | ||||| |||| |||| ||| || | || || | Sbjct 1625 TTTCTCCAAAAAATGCTTTAGTCAAACAGTATC---AATTTTTATTTAACTTAGAAGGAG 1569 Query 189461 TGGAATTAGAATTCCAAAAAGAAGCATTAGAATCAATTGCAGATGAAGCGATTGAACGTA 189520 |||||||||||||| ||||| | ||| || || ||||| | || | | | | | Sbjct 1568 TGGAATTAGAATTCAAAAAAAATGCACTAATTTCCATTGCCAAACAATCTCTAAGAAGAA 1509 Query 189521 ATACTGGTGCTCGCGGATTACAATCCATTATTGAAAATATTATGTTAGATGTAATGTAT 189579 | ||||| ||||| ||||| || ||||| ||| || || | |||||| |||||| Sbjct 1508 AAACTGGCGCTCGAGGATTGAGGTCGATTATAGAATATGTTTTATTAGATACGATGTAT 1450 >seq771 Length=5339 Score = 174 bits (192), Expect = 5e-38 Identities = 570/860 (66%), Gaps = 72/860 (8%) Strand=Plus/Minus Query 54149 AAGATACCAACCAGCTACTCCAACTTTCCTAAATGCTGGTAGAAGCAGACGCGGAGAAAT 54208 ||||| ||||||||||||||||| || |||||| ||||| || ||| |||||| Sbjct 2818 AAGATTTCAACCAGCTACTCCAACGTTTCTAAATTGTGGTAAAAAACAACGTGGAGAATA 2759 Query 54209 GGTTTCTTGTTTCTTATTAGAAATGGATGATAGCTTGAATTCAATTGGTTTCAATATCAA 54268 | || || || |||||| || || |||| || | || ||||| | || || Sbjct 2758 CATATCATGCTTTTTATTACGTATAGAAGATAATATGGAATCCATTGGGCGCGCGATTAA 2699 Query 54269 TACTGCAATGCAATTATCTAAAATTGGCGGCGGCGTTGCCTTAAACCTTTCTAAAC---T 54325 | | || ||||| ||||||||| || || || || | || ||| | ||| | Sbjct 2698 TGCAGCTTTGCAACTATCTAAAAGAGGAGGAGGAGTATCATT-----TTTATTAACAAAT 2644 Query 54326 TAGAGGAAGAA--AAGAGCAA--ATTAAAGGTATTGATGATGCTGCTTCTGGAGTAGTAC 54381 | || |||| | | ||| |||||| |||| | || |||| ||| | ||| Sbjct 2643 TTAAG--AGAATCAGGGGCACCTATTAAATATATTAAAAATCAATCTTCCGGAATTATAC 2586 Query 54382 CAGTTATGAAACTTTTAGAAGATAGCTTCTCTTATGCTAATCAGCTTGGCCAAAGAAAAG 54441 | |||||||| | ||||||||| || |||||||||||||| | || | || ||| Sbjct 2585 CGATTATGAAAATCTTAGAAGATGCTTTTTCTTATGCTAATCAATTAGGTGCACGACAAG 2526 Query 54442 GCGCTGGAGCTGTTTACTTAAA----CATCTTCCACTGGGATATTATTGAA-TTCTTAGA 54496 | |||||||| || || ||| | |||| ||| |||||| ||||| || ||||| Sbjct 2525 GAGCTGGAGCCGTATATTTACATGCTCATCATCC----TGATATT-TTGAAGTTTTTAGA 2471 Query 54497 TACTAAAAAGATCAATGCTGATGAAAAAGCCAGAATTCAATCTTTATCTATTGG-ATTA- 54554 ||||||||| ||||||||||||||| ||||||| || | ||||| | || ||| Sbjct 2470 TACTAAAAAAGAAAATGCTGATGAAAAAACCAGAATAAAAACCCTATCTTTAGGTGTTAT 2411 Query 54555 -ATTGCTGAAAAAATCTTCTTCCAATTAGCAAAAAGAAACGAAGAAATGTATGTTTTTGC 54613 ||| |||| | | || || |||||||||||| |||| ||||||||||| | ||| | Sbjct 2410 CATTCCTGATATTA-CT--TTTCAATTAGCAAAAGAAAACAAAGAAATGTATTTGTTTTC 2354 Query 54614 TCCTCACTCGGTTTACAGAGCTTATGGT-GAACATTTAGATGACATGGATT-TAAATGTT 54671 ||| || || | | || |||| | || ||||| | || |||| | | | Sbjct 2353 TCCATACGATATTGAAAAAGTTTATCATCGACCATTT--TCGGAATTGATTATTAGCGAA 2296 Query 54672 ATGTATGATAAGTTAGTTAAAAACCCAGCTG--TTAAGAAA--CGTAAGTTAAATTTAAC 54727 | ||| |||| ||| | || | || | |||| ||| || || |||| Sbjct 2295 CTTTATCATAATTTATCTCAAGA--TAGTCGGATTAAAAAAATCGCAA-TTAA------- 2246 Query 54728 TGCTCGCGAAATGCTTATTAAAA--TTGCTATTATTCAATTAGAATCTGGCTACCCTTAT 54785 || |||| ||| || | |||| | ||| |||||||| ||||| || ||||| ||| Sbjct 2245 TG--CGCGTAATTTTTTTCAAAAATTAGCTGAAATTCAATTTGAATCCGGATACCCATAT 2188 Query 54786 TTTATGTACAAAACTAACGCTAATGATACTCACGCATTAAAAGATATTGGCCAAGTTAAA 54845 |||||| | || || || ||| |||| | | || | |||| || |||| Sbjct 2187 ATTATGTTCGAAGATACCGTAAATCGTACTAATCC--TA----TTTTTGGGCATATTAAT 2134 Query 54846 ATGAGTAATCTTTGTACGGAAATCTTCCAATTACAAGAGACAT-----CTACTATTAATA 54900 ||||||||| | ||| | ||||| || ||| || || || | | ||| || || | Sbjct 2133 ATGAGTAATTTATGTTCTGAAATTTTACAAGTA-AATAGCCCTTCAGAATACAATGAAGA 2075 Query 54901 ACTATGGTACTGATGATGAAAT--CAAGAGAGATATCAACTGTAATTTAGGTTCATTAAA 54958 || | | || | |||| || ||| ||||| ||||||||||| || ||||| Sbjct 2074 CTTA----AGTTATAAAAAAATAGGAACAGATATATC--TTGTAATTTAGGATCTTTAAA 2021 Query 54959 TATTGTTAATGTAATGGAAT 54978 ||||| |||| ||||||| Sbjct 2020 TATTGCTAATACTATGGAAT 2001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1591875195896448