Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq116 170 4e-37
seq32 149 1e-30
seq2 149 1e-30
seq31 102 2e-16
seq36 84.2 4e-11
>seq116
Length=862150
Score = 170 bits (188), Expect = 4e-37
Identities = 175/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
|||||| | | ||||| || ||||| ||||||||||| || ||||| || ||||||||
Sbjct 484313 ACCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGA 484254
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
| | | || ||||| | ||||| ||||||||||| | | || || ||||||||
Sbjct 484253 CAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 484194
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762
|| |||||||| || || || |||||||| || ||||| || || || ||||||||
Sbjct 484193 AATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTAC 484134
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
||||||||| ||||| || || ||||| || || |||||||| ||||||
Sbjct 484133 TTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCATT 484085
Score = 145 bits (160), Expect = 1e-29
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || | |||||| | ||| || || || || ||||||||||| || || || || ||
Sbjct 481881 CCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAG 481822
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
|| | | || | ||| | ||||| ||||||||||| | | |||||||||||| ||
Sbjct 481821 AGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 481762
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
| |||||| ||||||||||| || | ||| ||||| ||||| || || || || ||
Sbjct 481761 ACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAACC 481702
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
||||| || || || || || ||||| ||||| || || |||||||||
Sbjct 481701 TCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATT 481654
Score = 132 bits (146), Expect = 9e-26
Identities = 120/151 (79%), Gaps = 0/151 (0%)
Strand=Plus/Minus
Query 82664 TTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAAT 82723
||| || |||||||| || | | ||| |||||||| || || |||||||||||||||||
Sbjct 474251 TTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGAAT 474192
Query 82724 CTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCC 82783
|| ||||| |||||||| || ||||| ||||| ||||||||||| || || |||||
Sbjct 474191 TTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTGCC 474132
Query 82784 TGTCAACGTCTTTACAAATATCTGCATTATT 82814
|| || || |||||||| || |||||| ||
Sbjct 474131 AGTTAATGTTTTTACAAAGATTTGCATTTTT 474101
Score = 102 bits (112), Expect = 2e-16
Identities = 127/174 (73%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||||| || || |||| || ||||| || ||||| || |||||||| | | | ||
Sbjct 484073 ACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCC 484014
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||||| | ||||| ||||||||||| | | || || |||||||| || ||||||||
Sbjct 484013 ATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTT 483954
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAA 82768
|| || || |||||||| || ||||| || ||||| | ||| || |||||
Sbjct 483953 GTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCAACCTCCAA 483900
>seq32
Length=1919080
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| |||| ||||||||| || | || | || |||||||| || ||||||||||| ||
Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 39252
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
| | | || ||||| | ||| |||||||| || || | || ||| || || || ||
Sbjct 39253 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 39312
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
||||| || || || |||||||| |||||||||||||| || || || ||||| ||
Sbjct 39313 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 39372
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | ||| || |||||||| || | || |||||||| ||||||||
Sbjct 39373 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 39419
>seq2
Length=5618958
Score = 149 bits (164), Expect = 1e-30
Identities = 168/225 (75%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654
||| || || ||||||| || || || || ||||| ||||| || |||| | | ||
Sbjct 3063883 ACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGCCC 3063942
Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714
||||| | ||| || ||||| || || | | ||||||||||||||| || ||||| ||
Sbjct 3063943 ATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTT 3064002
Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774
||| ||||| || || || ||||||||||| || || ||| || ||||||||||| ||
Sbjct 3064003 ATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAAT 3064062
Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATT 82819
|| ||||| || | || || || || || |||||| |||||||
Sbjct 3064063 AGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTTATATT 3064107
>seq31
Length=2008811
Score = 102 bits (112), Expect = 2e-16
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 144079 TATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTTATTT 144138
||||||||||| | || | | ||||| | || |||||| | || ||||| ||| | |
Sbjct 484164 TATGCGATAATCTTCTTATGTGCGTAGTACGTGCGTGGGATTTGAAAAAACCGCTTTTAT 484105
Query 144139 TTTGCCCCGCTATGAATACCCTTATGTGGGAACATCCTATTACAGAAAAACATATAGATA 144198
||||||| ||||||||||| | |||| || ||||| |||||| | || || |||
Sbjct 484104 TTTGCCCTGCTATGAATACGCGCATGTATGATCATCCAATTACATCGGATCAAATTAATA 484045
Query 144199 CTTTAAAACATATGGGTTTCATAGAAATAGAATGTATAGaaaaaaaaCTAGCCTGTGGAG 144258
|||||| | ||| | | |||||| | |||||| ||| | ||| ||||| |
Sbjct 484044 AATTAAAATCTTGGGGCTACCACGAAATACCAAGTATAGCAAAGACTCTAATATGTGGTG 483985
Query 144259 ACGTAGGAAATGGTGCTATGGCAGAAGTT 144287
|| || ||||| |||||||| ||||||
Sbjct 483984 ACACTGGCAATGGGGCTATGGCCGAAGTT 483956
>seq36
Length=1779304
Score = 84.2 bits (92), Expect = 4e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Minus
Query 198327 ACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCAT 198386
|| ||||| | |||||||| || | ||| | || |||| ||| || ||||||||
Sbjct 1521832 ACCCATGATGATTTATGGAATTCAGCCCAACTGCAATTGATGCAAGAGGGTAAAATGCAC 1521773
Query 198387 AGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGAC 198446
| ||||| | ||||| |||||||||||||| | |||||| | | || || ||||||
Sbjct 1521772 GGCTTTTTGCGTATGTATTGGGCTAAAAAGATTTTAGAATGGTCTAAAAGCCCTGAAGAC 1521713
Query 198447 GCTTT-GAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTAA 198505
||||| || | | | || |||||| ||| ||| | || ||||||||||| ||
Sbjct 1521712 GCTTTGGAAATTTCGCTACT-TCTAAATGATAGATACAGTTTGGATGGCACGGATCCCAA 1521654
Query 198506 CGGATACGTAGGT 198518
|| || || |||
Sbjct 1521653 TGGTTATGTCGGT 1521641
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981805487505114
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |