Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq116 170 4e-37 seq32 149 1e-30 seq2 149 1e-30 seq31 102 2e-16 seq36 84.2 4e-11 >seq116 Length=862150 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| | | ||||| || ||||| ||||||||||| || ||||| || |||||||| Sbjct 484313 ACCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGA 484254 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | | || ||||| | ||||| ||||||||||| | | || || |||||||| Sbjct 484253 CAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 484194 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| || || || |||||||| || ||||| || || || |||||||| Sbjct 484193 AATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTAC 484134 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||||||| ||||| || || ||||| || || |||||||| |||||| Sbjct 484133 TTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCATT 484085 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | |||||| | ||| || || || || ||||||||||| || || || || || Sbjct 481881 CCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAG 481822 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || | ||| | ||||| ||||||||||| | | |||||||||||| || Sbjct 481821 AGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 481762 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 | |||||| ||||||||||| || | ||| ||||| ||||| || || || || || Sbjct 481761 ACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAACC 481702 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || || || || ||||| ||||| || || ||||||||| Sbjct 481701 TCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATT 481654 Score = 132 bits (146), Expect = 9e-26 Identities = 120/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 82664 TTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAAT 82723 ||| || |||||||| || | | ||| |||||||| || || ||||||||||||||||| Sbjct 474251 TTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGAAT 474192 Query 82724 CTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCC 82783 || ||||| |||||||| || ||||| ||||| ||||||||||| || || ||||| Sbjct 474191 TTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTGCC 474132 Query 82784 TGTCAACGTCTTTACAAATATCTGCATTATT 82814 || || || |||||||| || |||||| || Sbjct 474131 AGTTAATGTTTTTACAAAGATTTGCATTTTT 474101 Score = 102 bits (112), Expect = 2e-16 Identities = 127/174 (73%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||||| || || |||| || ||||| || ||||| || |||||||| | | | || Sbjct 484073 ACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCC 484014 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | ||||| ||||||||||| | | || || |||||||| || |||||||| Sbjct 484013 ATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTT 483954 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAA 82768 || || || |||||||| || ||||| || ||||| | ||| || ||||| Sbjct 483953 GTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCAACCTCCAA 483900 >seq32 Length=1919080 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || |||| ||||||||| || | || | || |||||||| || ||||||||||| || Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 39252 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || ||||| | ||| |||||||| || || | || ||| || || || || Sbjct 39253 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 39312 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| || || || |||||||| |||||||||||||| || || || ||||| || Sbjct 39313 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 39372 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| || | || |||||||| |||||||| Sbjct 39373 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCAT 39419 >seq2 Length=5618958 Score = 149 bits (164), Expect = 1e-30 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || || ||||||| || || || || ||||| ||||| || |||| | | || Sbjct 3063883 ACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGCCC 3063942 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | ||| || ||||| || || | | ||||||||||||||| || ||||| || Sbjct 3063943 ATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTT 3064002 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||| ||||| || || || ||||||||||| || || ||| || ||||||||||| || Sbjct 3064003 ATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAAT 3064062 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATATT 82819 || ||||| || | || || || || || |||||| ||||||| Sbjct 3064063 AGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTTATATT 3064107 >seq31 Length=2008811 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 144079 TATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTTATTT 144138 ||||||||||| | || | | ||||| | || |||||| | || ||||| ||| | | Sbjct 484164 TATGCGATAATCTTCTTATGTGCGTAGTACGTGCGTGGGATTTGAAAAAACCGCTTTTAT 484105 Query 144139 TTTGCCCCGCTATGAATACCCTTATGTGGGAACATCCTATTACAGAAAAACATATAGATA 144198 ||||||| ||||||||||| | |||| || ||||| |||||| | || || ||| Sbjct 484104 TTTGCCCTGCTATGAATACGCGCATGTATGATCATCCAATTACATCGGATCAAATTAATA 484045 Query 144199 CTTTAAAACATATGGGTTTCATAGAAATAGAATGTATAGaaaaaaaaCTAGCCTGTGGAG 144258 |||||| | ||| | | |||||| | |||||| ||| | ||| ||||| | Sbjct 484044 AATTAAAATCTTGGGGCTACCACGAAATACCAAGTATAGCAAAGACTCTAATATGTGGTG 483985 Query 144259 ACGTAGGAAATGGTGCTATGGCAGAAGTT 144287 || || ||||| |||||||| |||||| Sbjct 483984 ACACTGGCAATGGGGCTATGGCCGAAGTT 483956 >seq36 Length=1779304 Score = 84.2 bits (92), Expect = 4e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 198327 ACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGCAT 198386 || ||||| | |||||||| || | ||| | || |||| ||| || |||||||| Sbjct 1521832 ACCCATGATGATTTATGGAATTCAGCCCAACTGCAATTGATGCAAGAGGGTAAAATGCAC 1521773 Query 198387 AGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAGAC 198446 | ||||| | ||||| |||||||||||||| | |||||| | | || || |||||| Sbjct 1521772 GGCTTTTTGCGTATGTATTGGGCTAAAAAGATTTTAGAATGGTCTAAAAGCCCTGAAGAC 1521713 Query 198447 GCTTT-GAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCTAA 198505 ||||| || | | | || |||||| ||| ||| | || ||||||||||| || Sbjct 1521712 GCTTTGGAAATTTCGCTACT-TCTAAATGATAGATACAGTTTGGATGGCACGGATCCCAA 1521654 Query 198506 CGGATACGTAGGT 198518 || || || ||| Sbjct 1521653 TGGTTATGTCGGT 1521641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981805487505114