Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq36 84.2 4e-11 seq31 84.2 4e-11 >seq36 Length=1779304 Score = 84.2 bits (92), Expect = 4e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 183010 ACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCAT 183069 || ||||| | |||||||| || | ||| | || ||||| ||| || |||||||| Sbjct 1521832 ACCCATGATGATTTATGGAATTCAGCCCAACTGCAATTGATGCAAGAGGGTAAAATGCAC 1521773 Query 183070 AGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGAT 183129 | ||||| || ||||| |||||||||||||| | |||||| | | || || ||||| Sbjct 1521772 GGCTTTTTGCGTATGTATTGGGCTAAAAAGATTTTAGAATGGTCTAAAAGCCCTGAAGAC 1521713 Query 183130 GCTTTG 183135 |||||| Sbjct 1521712 GCTTTG 1521707 >seq31 Length=2008811 Score = 84.2 bits (92), Expect = 4e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 143098 TATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTTATTT 143157 ||||||||||| | || | | ||||| | || |||||| | || ||||| ||| | | Sbjct 484164 TATGCGATAATCTTCTTATGTGCGTAGTACGTGCGTGGGATTTGAAAAAACCGCTTTTAT 484105 Query 143158 TTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTACAGAAAAACATATAGATG 143217 |||| || |||||||||| | |||| || ||||| |||||| | || || || Sbjct 484104 TTTGCCCTGCTATGAATACGCGCATGTATGATCATCCAATTACATCGGATCAAATTAATA 484045 Query 143218 CTTTAAAACATATGGGTTTCATAGAAATAGAATGCATAGaaaaaaaaCTAGCCTGCGGAG 143277 |||||| | ||| | | |||||| | | |||| ||| | ||| || || | Sbjct 484044 AATTAAAATCTTGGGGCTACCACGAAATACCAAGTATAGCAAAGACTCTAATATGTGGTG 483985 Query 143278 ACATAGGAAATGGTGCTATGGCAGAAGTT 143306 ||| || ||||| |||||||| |||||| Sbjct 483984 ACACTGGCAATGGGGCTATGGCCGAAGTT 483956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903391708903360