Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq32 96.9 3e-15 seq116 87.8 2e-12 >seq32 Length=1919080 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||||| |||||| ||||| || ||||| |||||| || ||| | | | || || | | Sbjct 39216 ATGTAAGGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGGCCA-TCTTCCAATT 39274 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| |||| | || ||||||||||| || || || || ||||| |||| Sbjct 39275 GCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTCCTGAATCT 39334 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | || | | || | ||||| | ||| || || || | |||| ||| ||||| | Sbjct 39335 TGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGTCTTGCCCG 39394 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || |||||||| ||||||||||| Sbjct 39395 TTAGGGTTTTTACAAAAATCTGCAT 39419 >seq116 Length=862150 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || || ||||| |||||||| || ||| | | | || || | ||| ||||| Sbjct 484282 GTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCA-TCTTCCAACTGTTTGCC 484224 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | ||||||||||| ||||| || ||||||||||| ||| |||||||| Sbjct 484223 AGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT-TTTTGCTT 484165 Query 133583 GAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| | || || || || | |||| ||||| ||||||| || Sbjct 484164 TAACGTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTGATCGTTTTTCCGGTCAAAG 484105 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || || ||||| Sbjct 484104 TTTTAACAAATATTTGCAT 484086 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483410370196240