Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq162 168 2e-36 seq207 109 1e-18 seq35 105 2e-17 seq245 100 7e-16 >seq162 Length=626193 Score = 168 bits (186), Expect = 2e-36 Identities = 568/863 (66%), Gaps = 25/863 (3%) Strand=Plus/Plus Query 110306 TTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATTGA 110365 |||||| || |||||| | ||||| |||||||| | | || ||| | || | || Sbjct 499109 TTTTGGCTTTAAAACTTTAGAACGATCTTATTTATTAAAGATTAACGGCAAAATTGTGGA 499168 Query 110366 ACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAAGC 110425 || || || || ||||| | ||||| || ||||| ||||| || ||| ||| |||| Sbjct 499169 GCGGCCACAGCATATGTTAATGCGTGTCGCTATTGGCATTCACGGCGGTGACATTGAAGC 499228 Query 110426 TGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTAT--TCATGCTACTCCTACC 110483 | ||||||| |||| || | | || | | || | ||||||| | || || Sbjct 499229 GGCTATTGAAACTTATAATCTCAT--GTCGGAGGGTTACTTTACTCATGCTTCCCCAACT 499286 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAAC 110543 ||||| || | || | | |||||| | || ||| | | ||| || Sbjct 499287 TTATTTGGTGCTGCTACCATACGCCCGCAATTGTCGTCCTGCGTCTTGCTAACTATGCCG 499346 Query 110544 GATGATTCTATTGAAGGTATTTATGATG-CTCTTAAAGAAACTGCTCTTATTTCTAAAAA 110602 || || || ||||| |||||| |||| | || | | || |||| |||||||| Sbjct 499347 GAAGACTCCATTGATGGTATT-ATGAAGGCTATAGACCAATGTGCTAAAATTTCTAAGGC 499405 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAA--TATC--G 110658 | || ||||| ||| | | ||||| || || ||| ||| | || |||| | Sbjct 499406 GGCCGGTGGAATAGGTCTAAATATTCATTGCATACGAGCAAGAGGGACTAAGATATCTGG 499465 Query 110659 CAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTG 110718 || || |||| | || || || |||||||| |||||| | | |||||| | || Sbjct 499466 TAATAGTGAAGTAT-CTG--AC-GGTCTTGTTCCTATGTTACGTCTGTTCAACAATGTTG 499521 Query 110719 CAAAATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTGCTATCTATCTCGAAC 110775 | ||||| | ||||||||| | | | || | |||||||| || | || | Sbjct 499522 CCCGTTATGTCGACCAAGGTGGTGGAAAACGTCCGGGGGCTTTTGCTATATACTTAGAGC 499581 Query 110776 CTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAA-AATCAAGGATTTGAAGAA 110834 |||||||| ||||||| || ||||| || ||||| ||| ||| ||| || ||| Sbjct 499582 CTTGGCATGCAGATATTTTCGAATTTCTA-AACTTGAAAAAGAATACGGGAAAGGAGGAA 499640 Query 110835 CAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTT 110894 | | ||||| |||||||||||||| ||||||| | ||||| ||||||||| | ||| Sbjct 499641 GACCGTGCACGGGATTTATTTTATGCTCTGTGGATCCCCGATTTGTTCATGAAAAGAGTT 499700 Query 110895 CAAGAAAATG-GCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGT 110953 | | ||| |||| |||||||| |||||||| ||| | ||||| | | ||| | Sbjct 499701 GAGGCTGATGAGCAT-TGGTCTCTAATGTGTCCCCATAAATGCCCTGGCTTGTGTGAAAT 499759 Query 110954 ATATGGAAAAGAGTTTGA-AGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCA 111012 |||||| | | ||||| ||| | ||| ||||||||| | || ||||| || Sbjct 499760 TTATGGAGACAAATTTGATAGA-TTATACATGAAATATGAAGACGAGGGCAAAGCGAACA 499818 Query 111013 AACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAAT-CACAAGTTGAAACTGGA 111071 || ||| ||||| || | |||| ||| | | | | ||||| || || ||| Sbjct 499819 AAACAATAAAAGCTCGTGACTAGTAGTTCGCAAT-ATGCAGTGCCCAAGTAGAGACCGGA 499877 Query 111072 ACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGA 111131 |||||||| || | || |||||| | |||||||||| ||||||| |||| | || Sbjct 499878 ACTCCTTACATGCTTTACAAAGATGCTTGTAATCGCAAAAGTAATCAACAGAATGTTGGC 499937 Query 111132 ACAATTAAGTCTAGTAATTTGTG 111154 || || || | ||||| ||||| Sbjct 499938 ACTATAAAATGCAGTAACTTGTG 499960 >seq207 Length=490244 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||| | |||||| | || || || || |||||||||||||| ||| |||| | | ||| Sbjct 368204 GTTTTATTCAATCGCCAGCCCTCGCTTCATAAAATGTCTATTATGTGTCATCAGGCCAAG 368145 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449 ||| || || || || || |||| | | |||||||||||||||||||| ||| Sbjct 368144 GTACAGCCTCAGCGTACCTTCCGTTTTAATGAATGCGCTTGTACGCCTTATAATGCTGAT 368085 Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 ||||| |||||||| |||||| ||||| |||| || Sbjct 368084 TTTGACGGAGATGAGATGAATTTGCATCTACCACA 368050 >seq35 Length=1782701 Score = 105 bits (116), Expect = 2e-17 Identities = 135/185 (73%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 ||||||||| || |||| | |||| | |||||| | || || | ||||| |||||| Sbjct 1405440 AGACATTTGCGCGATGATGACTTGGTTATATTCAATCGTCAGCCTACTCTGCACAAAATG 1405381 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 |||||||| |||| || ||||| || | | | ||||| || | ||| || Sbjct 1405380 AGTATGATGGGTCATCGTGTTAAAGTGTTGCCATGGTCTACATTCCGTATGAATTTAT-- 1405323 Query 305426 GCTTGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 ||||||| || |||||||| ||||||||||| |||||||||||| | |||||||| Sbjct 1405322 -CTTGTACTTCCCCATATAATGCAGATTTTGATGGTGATGAAATGAATTTACATGTACCG 1405264 Query 305483 CAATC 305487 ||||| Sbjct 1405263 CAATC 1405259 >seq245 Length=384531 Score = 100 bits (110), Expect = 7e-16 Identities = 307/460 (67%), Gaps = 20/460 (4%) Strand=Plus/Minus Query 279854 CGTTCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGT 279913 ||||| || || |||| | || || || || || ||||||||| | ||||||| | Sbjct 259408 CGTTCAATACCATGTTTAGTTGACGGCTTTAAGCCCGGTCAGCGTAAGGTAATATTCACT 259349 Query 279914 TGTTTCAAAAGAAAATTGGTAAAGGAAATTCGT--GTTGCTCAGTTAGCAGGTTATGTTT 279971 ||||||||| | || | |||| || | | ||||| || ||| | || | || Sbjct 259348 TGTTTCAAACGTAAC--GATAAACGAGAAGTGAAAGTTGCGCAATTATCTGGATCCGTGG 259291 Query 279972 CAGAACATG-CAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTT 280030 | ||| ||| | | ||||||||||||||||| |||| | ||| | || || || | Sbjct 259290 CGGAA-ATGTCCGCTTATCATCACGGTGAAGTGTCTTTGCAAATGACCATAGTCAGTTTG 259232 Query 280031 GCCCAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGT 280090 || ||| ||| | ||| ||| || || |||||||| | |||| |||||||||||| Sbjct 259231 GCACAAAATTATGTGGGTTCGAATAATATAAATCTGTTGGAGCCAAGAGGTCAATTTGGT 259172 Query 280091 TCTCGTATTCAC-AATGGAAAAGATCATGGTAGTGCTCGTTACA----TAC-ATACATGT 280144 | || || || || |||||| || |||||||||||| | ||| |||| ||| Sbjct 259171 ACCCG-CTTAACTGGCGGCAAAGATAGTGCTAGTGCTCGTTATATTTTTACTATAC-TGT 259114 Query 280145 CTTTCAGATATTACAAACAAGTTATTT-ATCAATTCTGATAATGCTTCATTAGAGTGGCT 280203 | | | ||| || | ||||| ||| | | ||| |||| | ||| || Sbjct 259113 C--CCCGTTATCACGTCTTA--TATTTCATC-CTGCCGATGATGCGTTGTTAACGTACGA 259059 Query 280204 AGAGGATGATGGTCTTGCTATTGAACCAACATATTATGCTCCAATTATCCCTATGATTCT 280263 | |||||| |||| || ||||| || ||| ||||||||| || ||| | | Sbjct 259058 GGTGGATGACGGTCAGAAGATAGAACCTCAATGGTATATTCCAATTATACCGATGGTATT 258999 Query 280264 TGTTAATGGTGCTCAAGGAATTGGAACAGGTTATTCTACA 280303 |||||||| ||| | || || ||||| |||| |||||| Sbjct 258998 AGTTAATGGAGCTGATGGTATAGGAACCGGTTGGTCTACA 258959 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/213 (71%), Gaps = 12/213 (6%) Strand=Plus/Minus Query 279353 TTACGATATGGTAAAATTATTATTTTGACAGACCAAGATTTAGATGGAAGTCACATTAAA 279412 ||||| || |||||| | || || |||| || || ||| |||||| |||||||||| Sbjct 260015 TTACGTTACGGTAAAGTGATGATCATGACTGATCAGGATCAAGATGGTTCTCACATTAAA 259956 Query 279413 GGATTAATACTTAATTGGGTTGATACTTTCTGGCCAGAATTGTT--GAATCAAAATTTTG 279470 || || || |||| | || | || |||||||||||||| | | || || Sbjct 259955 GGTTTGCTAATTAACTTCATTCACACAAATTGGCCAGAATTGTTACGCTTACCGTTTCTG 259896 Query 279471 TAAGTGTGTTTCAAACACCAATTATTAAGGCAACTAAAGGTAAAAAAGAAGAA---GTAT 279527 || | |||| ||| |||||| |||| || || ||| ||||| |||||| | | Sbjct 259895 GAA--GAGTTTATAACGCCAATTGTTAAAGCTACGAAA---AAAAATGAAGAACTTGCGT 259841 Query 279528 TTTATTCATTG-CAGAAGTTTGAACAATGGAAA 279559 ||||||||||| ||||| |||||| |||||||| Sbjct 259840 TTTATTCATTGCCAGAA-TTTGAAGAATGGAAA 259809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186786554376686