Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq116 152 3e-32 seq32 127 1e-24 >seq116 Length=862150 Score = 152 bits (168), Expect = 3e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | ||||||||| |||||||| || || ||||| || |||||||| |||||| Sbjct 481881 CCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAG 481822 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| | | ||||| ||||| || ||||| |||||||| || |||||| | || Sbjct 481821 AGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 481762 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 || |||||||| || |||||| |||| ||||| || | |||||| || || || Sbjct 481761 ACTCCTTCTTTATCTTGAATTTT-AGTTTTAACATTCTCAATAGTGTCGGATGGCTCAAC 481703 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| ||||| || || || || || || ||||||||||| Sbjct 481702 CTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 481655 Score = 138 bits (152), Expect = 7e-28 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || | | ||| |||||||| || ||||| || ||||||||||||||||| | Sbjct 484314 CACCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAG 484255 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | | |||||| | || ||||| ||||| || ||||| |||||||||||||| ||| | | Sbjct 484254 ACAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 484195 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | |||||| ||||| ||||| || || ||| | || | ||||| | ||| Sbjct 484194 GAATACCTTCCTTGTCCTGGATTTT-TGCTTTAACGTTTTCGATAGTGTCTGACGGTTCT 484136 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||||||||| || || || ||||| ||||| || ||||| Sbjct 484135 ACTTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| ||||||||||| | ||| || ||||||||||||||||| || Sbjct 484084 CCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGAC 484025 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || ||||| ||||| || ||||| |||||||||||||| ||| | || Sbjct 484024 AATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 483965 Query 33643 ACACCTTCTTTGTC 33656 | |||||| ||||| Sbjct 483964 ATACCTTCCTTGTC 483951 Score = 93.3 bits (102), Expect = 3e-14 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||||| || || |||||||||||||| ||||||||| | || | |||||| || || | Sbjct 474253 AATTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGA 474194 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| | || ||||| || | || || || ||| || || | || || ||||| Sbjct 474193 ATTTT-AGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTT 474135 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || ||||| |||||||||||||| ||||| Sbjct 474134 GCCAGTTAATGTTTTTACAAAGATTTGCAT 474105 >seq32 Length=1919080 Score = 127 bits (140), Expect = 1e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| |||||| | ||| | ||||| ||| |||||||| || || |||||||| Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 39252 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | |||||| | || |||||||| ||||| || |||||||| || ||||| || | || Sbjct 39253 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 39312 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| ||| || ||| | ||| || | ||||| | ||| || Sbjct 39313 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTA-CATTTTCGATAGTGTCCGAGGGTTCGAC 39371 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| || || || |||| ||||||||||| ||||||||| Sbjct 39372 CTCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATA 39420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328697085505920