Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_025412.1
Length=369360
Score E
Sequences producing significant alignments: (Bits) Value
seq116 127 5e-24
seq32 105 2e-17
seq2 86.0 1e-11
>seq116
Length=862150
Score = 127 bits (140), Expect = 5e-24
Identities = 161/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
|| |||||| ||||| | || ||||||||||||||||||||||| ||| || |||
Sbjct 484089 CAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTCAGAC 484148
Query 206233 ACAGTCG-AATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291
|| ||| || | |||||||||| || || || || ||||| ||| || ||| ||
Sbjct 484149 ACTATCGAAAACGTTAAAGCAAAA-ATCCAGGACAAGGAAGGTATTCCTCCAGACCAGCA 484207
Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351
| | ||||| || || || |||||||||||||| | || ||| | ||||||||| |
Sbjct 484208 GCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAACAT 484267
Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390
|| || || |||||||||||| | || ||| | || ||
Sbjct 484268 ACAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCG 484306
>seq32
Length=1919080
Score = 105 bits (116), Expect = 2e-17
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232
||||| ||| ||||| || || || || || |||||| | || || ||| || |||
Sbjct 39416 CAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCGGAC 39357
Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292
|| ||||| ||||| |||||||| || ||||| |||||| || ||| |||
Sbjct 39356 ACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAGCAA 39297
Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352
|| | || ||||| |||||||| ||||||||||| | || ||| ||||||| || |
Sbjct 39296 CGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTATAATATT 39237
Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378
|| ||||| || || | || |||||
Sbjct 39236 CAAAAAGAATCCACCTTACATCTTGT 39211
>seq2
Length=5618958
Score = 86.0 bits (94), Expect = 1e-11
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244
||||| || || || ||||| || ||||||||||| || ||| ||||| | |||
Sbjct 3064083 AAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCTTCCGACACTATTGAAAAT 3064024
Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304
|| ||| || ||||| || |||||||| ||| || || ||| | | || |||
Sbjct 3064023 GTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGATCAACAACGTTTGATATTC 3063964
Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364
|| || ||||| ||||||||||| | || || |||| || ||| | || || |||||
Sbjct 3063963 GCTGGCAAGCAATTGGAAGATGGGCGCACGTTATCCGACTATAACATACAAAAGGAGTCG 3063904
Query 206365 AC 206366
||
Sbjct 3063903 AC 3063902
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1181794664771646
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |