Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq116 127 5e-24 seq32 105 2e-17 seq2 86.0 1e-11 >seq116 Length=862150 Score = 127 bits (140), Expect = 5e-24 Identities = 161/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || |||||| ||||| | || ||||||||||||||||||||||| ||| || ||| Sbjct 484089 CAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTCAGAC 484148 Query 206233 ACAGTCG-AATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||| || | |||||||||| || || || || ||||| ||| || ||| || Sbjct 484149 ACTATCGAAAACGTTAAAGCAAAA-ATCCAGGACAAGGAAGGTATTCCTCCAGACCAGCA 484207 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| || || || |||||||||||||| | || ||| | ||||||||| | Sbjct 484208 GCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAACAT 484267 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || || || |||||||||||| | || ||| | || || Sbjct 484268 ACAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCG 484306 >seq32 Length=1919080 Score = 105 bits (116), Expect = 2e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || || || |||||| | || || ||| || ||| Sbjct 39416 CAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCGGAC 39357 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| ||||| |||||||| || ||||| |||||| || ||| ||| Sbjct 39356 ACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAGCAA 39297 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | || ||||| |||||||| ||||||||||| | || ||| ||||||| || | Sbjct 39296 CGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTATAATATT 39237 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 || ||||| || || | || ||||| Sbjct 39236 CAAAAAGAATCCACCTTACATCTTGT 39211 >seq2 Length=5618958 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || ||||| || ||||||||||| || ||| ||||| | ||| Sbjct 3064083 AAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCTTCCGACACTATTGAAAAT 3064024 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || ||||| || |||||||| ||| || || ||| | | || ||| Sbjct 3064023 GTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGATCAACAACGTTTGATATTC 3063964 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | || || |||| || ||| | || || ||||| Sbjct 3063963 GCTGGCAAGCAATTGGAAGATGGGCGCACGTTATCCGACTATAACATACAAAAGGAGTCG 3063904 Query 206365 AC 206366 || Sbjct 3063903 AC 3063902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181794664771646