Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq162 127 2e-24 seq116 120 3e-22 seq2 116 4e-21 seq66 91.5 1e-13 >seq162 Length=626193 Score = 127 bits (140), Expect = 2e-24 Identities = 620/965 (64%), Gaps = 51/965 (5%) Strand=Plus/Minus Query 146680 TTAAACGATTGGCTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGT 146739 ||||| ||||||||||| || || ||||| ||| || | ||||| | | ||| Sbjct 500800 TTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCCATGT---TGATGG-- 500746 Query 146740 TTTGTCTTCA------TTTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATA 146793 ||| ||||| |||||||| | ||||| |||| | || | ||| || || || Sbjct 500745 -TTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATGCTTTCAGGTATG 500687 Query 146794 CCTTCAATGTTTTGAATAGAGCCCTTGTGCGCAAAAAT--AGTGTTTCGTATT-TCGGGC 146850 |||| |||||||| || |||||| || || || || ||| |||| | || || | Sbjct 500686 GCTTCGATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTTCATGTTATCATTC 500627 Query 146851 GTGTAAAGGTTTAGTTTAATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCG 146910 ||||| | || | | | || | || |||| |||||||| || |||||| Sbjct 500626 C---AAAGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGATAAACTCA 500570 Query 146911 CCCGCCAGCACACGTC-TGAGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATT 146969 || | ||| || |||| || | | | ||| |||| | ||||||||||||||||| || Sbjct 500569 CCAGACAGTACGCGTCGTGTGTGA-ATATTTGAAGTGTATGGCTCAAAAGACTCATTGTT 500511 Query 146970 GCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAG 147029 || | ||||| || || | || |||||||| || || | ||| ||||| |||| Sbjct 500510 ACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGGAATTGCGCAC 500451 Query 147030 ACCGTACGCACGGATGTTGTC-CTTCAAAGTT--TGCCAGTCCCACATCGACGAG--GGC 147084 || || || | |||| ||| ||| | ||| | | ||| || || ||| Sbjct 500450 TCCATA---ACTTTTAATGTCGCTTTTAAGATCCGACCAATTC--CATAGATCAGTAGGC 500396 Query 147085 GTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTA 147144 || | |||||| || || || || | || ||| | ||||| || | | || Sbjct 500395 GTTTTATCCCACATATCATATTGAAGGATAGCTTTACTAACTGGACTACCTTCATATGTT 500336 Query 147145 GTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATG 147204 ||| | || | | ||||||||||| || | || | | || || ||||| Sbjct 500335 TCGTACGGACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTCACCGTAATATATT 500276 Query 147205 GTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGA 147264 ||||| |||||||| |||| | | || | |||||| || || || ||||| Sbjct 500275 GTTTCAAAAATTTGTTTATTTAAGCGAGCAGCATTTTCGCTTTCATAGGGGTAACGCATT 500216 Query 147265 AGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCGATG------CTTT 147318 | | | || || || || || |||| || | || || || ||||| || Sbjct 500215 AAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAAATTA 500156 Query 147319 TCGTTGCTGCGCTTCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGG 147378 || ||| | ||| || | ||||||| ||| ||| || || ||||||||| Sbjct 500155 GACTTTCTG-GTTTC-----CGGCAACGGATAGTAATTGATATCGATTATTTTGTTGAGG 500102 Query 147379 TTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCT-TC 147437 || || || || | | | ||||||||| | |||||||| ||| || Sbjct 500101 TTCTTTGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGTC 500042 Query 147438 GACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC-GG 147496 | || | ||| |||| || || || || | |||||| || || | ||||| | Sbjct 500041 GTTAC--AAACAT--ATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAGC 499986 Query 147497 CGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAA-ATTT 147555 || || | || | |||||||| | |||| ||| ||||||||||| | | |||| ||| Sbjct 499985 CGACG-TATATTCGACGATTTCTGTACACAAGTTACTGCATTTTAT-AGTGCCAACATTC 499928 Query 147556 TGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCG 147615 || ||||| ||||| ||||| || || |||||| | |||||||| || |||||||| Sbjct 499927 TGTTGATTACTTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCT 499868 Query 147616 ACTTG 147620 ||||| Sbjct 499867 ACTTG 499863 >seq116 Length=862150 Score = 120 bits (132), Expect = 3e-22 Identities = 162/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| || ||||||||||| | | || ||||| ||||||||||||||| | || Sbjct 481876 ACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGT 481817 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || ||| | |||||| || | | |||| | ||| ||||||||||| || | || Sbjct 481816 GCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACTCC 481757 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAAC-TGTTCCACAGTATCGGTCGGCTCCACTTCGA 132080 ||||||||| | | |||| |||| ||| | || | ||| |||| ||||| || || | Sbjct 481756 TTCTTTATC-TTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAACCTCCA 481698 Query 132081 CCGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| ||||||| || || | ||| |||||||| Sbjct 481697 AGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCAT 481655 >seq2 Length=5618958 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| ||||| ||||| |||||| | || ||| |||||| Sbjct 3063890 ACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGCCCATCTTCC 3063949 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | || || || | | || | ||| |||||||||||||| |||||||||||||| | Sbjct 3063950 AATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGA 3064009 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 ||||| || | | ||| | ||| |||| ||||| ||||| | || | ||||| Sbjct 3064010 ATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTG 3064069 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| |||||||| | |||||| ||||| Sbjct 3064070 CCAGTAAGAGTTTTAACGAAAATTTGCAT 3064098 >seq66 Length=1297373 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 || |||||||||||||| | | || | ||||| ||||| ||||| | | || | Sbjct 241559 AAACGCAAAACCAAATGGAGAGTCGAACCCTTTTGTATGTTATAGTCCATTAACGTGCAA 241500 Query 131966 GAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCT 132025 |||||| ||||| || |||| ||| || | ||| | |||| ||| || ||||| || Sbjct 241499 CCATCTTCCAGCTGCTTGCCGGCATAAATCAAACGGCGCTGATTTGGTGGGATGCCGTCC 241440 Query 132026 TTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTC 132085 ||||| ||| || ||| | | ||| | |||||||||||| || | || | || Sbjct 241439 TTATCCTGAATCTTGGTTTTAATCGTTTCAATAGTATCGGTCGGTTCGGCATCTAAAGTG 241380 Query 132086 AGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || | || || | ||||| | |||||||||||| Sbjct 241379 AGGGTATGGCCCGTTAACGTTTTCACGAAAATCTGCAT 241342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476600917113360