Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq116 91.5 1e-13 seq2 87.8 1e-12 >seq116 Length=862150 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 106253 TTTAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGA 106312 ||| |||||||| || || || || ||||||||||| || || || ||| |||| || Sbjct 481648 TTTTAAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGA 481707 Query 106313 ACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGT 106372 || ||| || ||| | || ||| |||||| || |||||||| || || Sbjct 481708 GCCATCCGACACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACC 481767 Query 106373 TGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGAT--TCTAAAACTATGGGC 106430 ||||||||| | | || | ||| |||||||| || ||| || | | ||| | | Sbjct 481768 AGATCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCT--CC 481825 Query 106431 GATTACAACATACAAAAAGAATCTACACTACATTTAGTATT 106471 || |||||||| || |||||||| ||||| ||||| || || Sbjct 481826 GACTACAACATTCAGAAAGAATCGACACTCCATTTGGTTTT 481866 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||||||||| ||||| || || || || || ||||| |||||| Sbjct 484085 AATGCAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTC 484144 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || || | | | || ||| |||||| ||||| ||||| | || || || Sbjct 484145 AGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 484204 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || | | || | ||| |||||||| || |||||| || || |||||||| Sbjct 484205 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAA 484264 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||||||||| |||||||| || || || || ||| | | || ||||| Sbjct 484265 CATACAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGCGGAGG 484312 >seq2 Length=5618958 Score = 87.8 bits (96), Expect = 1e-12 Identities = 167/244 (68%), Gaps = 3/244 (1%) Strand=Plus/Minus Query 106229 TAATA-CGTTTGTCAT--TTATAAGAGTTTAAAAATGCAAATTTTTGTTAAAACATTGAC 106285 ||||| ||||| || | || | ||| | |||||||||||||||| |||||||| | || Sbjct 3064132 TAATAACGTTTTTCTTAATTTTCAGAATATAAAAATGCAAATTTTCGTTAAAACTCTTAC 3064073 Query 106286 TGGCAAGACCATTACCGTGGAAACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAA 106345 |||||| || ||||| ||||| || || ||| || ||| | || || || Sbjct 3064072 TGGCAAAACTATTACTTTGGAAGTTGAGCCTTCCGACACTATTGAAAATGTCAAGGCCAA 3064013 Query 106346 AATTGCCGACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACA 106405 |||| || ||||||||| | || ||||||||| | | || | || ||||| || Sbjct 3064012 AATTCAGGATAAAGAAGGCATTCCTCCAGATCAACAACGTTTGATATTCGCTGGCAAGCA 3063953 Query 106406 ATTAGAAGATTCTAAAACTATGGGCGATTACAACATACAAAAAGAATCTACACTACATTT 106465 ||| |||||| || | ||| || ||||||||||| || || || | || || Sbjct 3063952 ATTGGAAGATGGGCGCACGTTATCCGACTATAACATACAAAAGGAGTCGACCTTGCACTT 3063893 Query 106466 AGTA 106469 ||| Sbjct 3063892 GGTA 3063889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402321136745408