Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq116 152 5e-32 >seq116 Length=862150 Score = 152 bits (168), Expect = 5e-32 Identities = 165/216 (76%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 ||||||||| || | ||| |||||||| ||||||||||| | ||| || || | || Sbjct 484298 CAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATC 484239 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 |||| ||| || || ||||| ||||| ||||||||||| | ||||| | |||||||| Sbjct 484238 TTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTC 484179 Query 35644 CATGATCTTTTGCTTCAGAGTTGCC-ACCGTGTCGCTCGATTCCACCTCCACCGTGATCG 35702 | ||| |||||||| | ||| | | ||||| || ||| || |||| ||||||| Sbjct 484178 CTGGAT-TTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTGATCG 484120 Query 35703 TTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 |||| || ||||||||||| |||||||| ||||||| Sbjct 484119 TTTTTCCGGTCAAAGTTTTAACAAATATTTGCATTC 484084 Score = 111 bits (122), Expect = 1e-19 Identities = 116/151 (77%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 ||||||| || | | |||||||||||| || || |||||||| ||||||||||| | Sbjct 484086 TTCCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAG 484027 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 ||| || || | || |||| ||| || || ||||| ||||| ||||||||||| | || Sbjct 484026 ACAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 483967 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTT 35658 ||| | ||||||||| ||| |||||||| Sbjct 483966 GAATACCTTCCTTGTCCTGGAT-TTTTGCTT 483937 Score = 91.5 bits (100), Expect = 1e-13 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 35609 AACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCC 35668 || ||||||||||| | ||||| | ||||||||| ||| |||||||| | ||| | Sbjct 482010 AAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT-TTTTGCTTTAACGTTTTC 481952 Query 35669 -ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAA 35727 | || || ||||| ||||||| ||||| |||||||| ||||||||||| ||||| Sbjct 481951 GATAGTATCTGATGATTCTACCTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTAACAAA 481892 Query 35728 TATCTGCAT 35736 ||| ||||| Sbjct 481891 TATTTGCAT 481883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450783874128080