Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq116 158 1e-33 seq162 129 6e-25 seq2 127 2e-24 >seq116 Length=862150 Score = 158 bits (174), Expect = 1e-33 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCC 134545 ||||| | ||| |||||||| | ||| || || ||||||||||| |||||||| || | | Sbjct 484312 CCTCCGCGGAGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGAC 484253 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | || | || || | ||||||||| ||||| |||||||||||||| || || || Sbjct 484252 AATG-TGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGG 484194 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || || || |||||| ||| || || | ||||| |||| ||| || Sbjct 484193 AATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTAC 484134 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | ||| || ||||| ||||| ||||||||||| || ||||||||| Sbjct 484133 TTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCATT 484085 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 134568 TGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATT 134627 || ||||| |||||||||||||| |||||||| || || || ||||| || ||||||||| Sbjct 474250 TGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGAATT 474191 Query 134628 TTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCG 134687 || ||| || || | || || || | ||| || || | |||||| ||||| || Sbjct 474190 TTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTGCCA 474131 Query 134688 GTTAAAGTTTTAACGAAAATTTGCATTTT 134716 ||||| ||||| || || ||||||||||| Sbjct 474130 GTTAATGTTTTTACAAAGATTTGCATTTT 474102 Score = 111 bits (122), Expect = 2e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || ||||| || ||||||||||||||| | ||| | | || | |||| Sbjct 481857 TGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTTTCCAACTGT 481798 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| ||||| |||||||| || ||||| || || | |||||||| ||||||||||| Sbjct 481797 TTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTTATCTTGAATTTTA 481738 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | |||||||| | || || || | || || ||||| || || Sbjct 481737 GTTTTAACATTCTCAATAGTGTCGGATGGCTCAACCTCCAAGGTGATAGTTTTCCCAGTC 481678 Query 134691 AAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || |||||||| Sbjct 481677 AATGTCTTCACGAAGATCTGCATTTT 481652 Score = 102 bits (112), Expect = 8e-17 Identities = 117/155 (75%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 |||| || | ||| |||||||| | || | |||||||||||||| |||||||| || | Sbjct 484086 TTCCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAG 484027 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 ||| | || | || || | ||||||||| ||||| |||||||||||||| || || Sbjct 484026 ACAATG-TGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGA 483968 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGAC 134638 || || ||||| || || || |||||| ||| || Sbjct 483967 GGAATACCTTCCTTGTCCTGGATTTTTGCTTTAAC 483933 Score = 96.9 bits (106), Expect = 4e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 134586 AAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCC 134645 ||||||||||| || || || || ||||| || || || |||||| ||| || || Sbjct 482010 AAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCG 481951 Query 134646 AATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAA 134705 | || || || ||||| || || | ||| |||||||||||||| ||||||||||| || Sbjct 481950 ATAGTATCTGATGATTCTACCTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTAACAAAT 481891 Query 134706 ATTTGCAT 134713 |||||||| Sbjct 481890 ATTTGCAT 481883 >seq162 Length=626193 Score = 129 bits (142), Expect = 6e-25 Identities = 1163/1869 (62%), Gaps = 50/1869 (3%) Strand=Plus/Plus Query 7474 GAGCGCGATTACGATTACCGTTATTTTGCCGTAAAAACTTTAAAAAACGGCTACTTGTTG 7533 || ||||||| |||| || ||||| | | ||||||||| || || || || Sbjct 499086 GATCGCGATTTTAATTATAATTTTTTTGGCTTTAAAACTTTAGAACGATCTTATTTATTA 499145 Query 7534 AAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGGTGGGC 7593 || || |||||| || | ||| || || || ||| | |||| || || | ||| Sbjct 499146 AAGATTAACGGCAAAATTGTGGAGCGGCCACAGCATATGTTAATGCGTGTCGCTATTGGC 499205 Query 7594 ATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGAAACAG 7653 |||||||||| |||||||| || || | ||||| || | | ||||| | | Sbjct 499206 ATTCACGGCGGTGACATTGAAGCGGCTATTGAAACTTATAATCTCATGTCGGAGGGTTAC 499265 Query 7654 TTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCA-CAAACGCGCCTCAATTGTCCTC 7712 ||||| || ||||| || || | |||| || | | || |||| || |||||||| || Sbjct 499266 TTTACTCATGCTTCCCCAACTTTATTTGGTGCTGCTACCATACGC-CCGCAATTGTCGTC 499324 Query 7713 GTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGCGCGA 7772 || | |||||||| |||| |||||| ||| || || ||| || | | | | Sbjct 499325 CTGCGTCTTGCTAACTATGCCGGAAGACTCCATTGATGGTATTATGAAGGCTATAGACCA 499384 Query 7773 TTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGCGCGC 7832 || || || ||||| || | ||| ||||||||||| || | | | | || || Sbjct 499385 ATGTGCTAAAATTTCTAAGGCGGCCGGTGGAATAGGTCTAAATATTCATTGCATACGAGC 499444 Query 7833 CAACGGTA--GCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGTTG 7890 | || | ||| || | | | | | | |||| | | || ||||| Sbjct 499445 AAGAGGGACTAAGATATCTGGT--AATAGTGAAGTATCTGACGGTCTTGTTCCTATGTTA 499502 Query 7891 CGCGTGTTCAATAACGCGGTGCGACATGTAGACCA---GGGGGGAAAGCGCAAAGGCGCC 7947 || ||||||| || | | || |||| ||||| || ||||| || || || Sbjct 499503 CGTCTGTTCAACAATGTTGCCCGTTATGTCGACCAAGGTGGTGGAAAACGTCCGGGGGCT 499562 Query 7948 GCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGCGTCGC 8007 ||| || || || ||||| ||||| || || |||| || | | ||||| || Sbjct 499563 TTTGCTATATACTTAGAGCCTTGGCATGCAGATATTTTCGAATTTCTAAACTTGAAAAAG 499622 Query 8008 AACATGGGTTGCGAAGACAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGGTGCCCGAT 8067 || | ||| || || | || || ||| |||| | | ||||| | |||||| Sbjct 499623 AATACGGGAAAGGAGGAAGACCGTGCACGGGATTTATTTTATGCTCTGTGGATCCCCGAT 499682 Query 8068 CTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCGATCGTTGC 8127 |||| |||| | ||| | || | || ||||| || ||||| ||| || ||| Sbjct 499683 TTGTTCATGAAAAGAGTTGAGGCTGATGAGCATTGGTCTCTAATGTGTCCCCATAAATGC 499742 Query 8128 CCT---TTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAATACGAA 8184 ||| || | ||| |||| || |||||||| ||| |||| |||| ||| Sbjct 499743 CCTGGCTTGTGTGAAA---TTTATGGAGACAAATTTGATAGATTATACATGAAATATGAA 499799 Query 8185 CACGACGGC---GCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCATTATC 8241 |||| ||| ||| || ||| | ||||| || ||| | | || || ||| Sbjct 499800 GACGAGGGCAAAGCGAAC--AAAACAA-TAAAAGCTCGTGACTAGTAGTTCG-CAATATG 499855 Query 8242 GAATG-TCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAA 8300 | || ||| || ||||| | || |||||||| |||||||| ||||| || ||| Sbjct 499856 CAGTGCCCAAGTAGAGACCGGAACTCCTTACATGCTTTACAAAGATGCTTGTAATCGCAA 499915 Query 8301 AAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACA 8360 ||| |||||| || || ||||| || ||||| || |||| | ||||| || | Sbjct 499916 AAGTAATCAACAGAATGTTGGCACTATAAAATGCAGTAACTTGTGTACAGAAATCGTCGA 499975 Query 8361 GTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACGCGTT 8420 || | || | || ||| | || ||||||||| |||| || | || || ||| Sbjct 499976 ATATACGTCGGCTGAAGAAATAGCAGTTTGCAATTTAGCATCAATTGCGTTGAATATGTT 500035 Query 8421 CGTTGATCGACGCTCAAACACTTACGACTTTGAACAATTGAAAAACGCCGTGCAA--GTG 8478 || | |||| ||||| || || ||| | || | ||| | | ||||| | Sbjct 500036 TGT--AACGACAGATAAACA-ATATGATTTTCACAAACTCAAAGAAG--TTGCAAAGCTT 500090 Query 8479 ACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGCGCGC 8538 | | || | | || || ||| |||||| ||||| ||| ||| | | Sbjct 500091 ATAACAAAGAACCTCAACAAAATAATCGATATCAATTACTATCCGTTGCCGGAAACCAGA 500150 Query 8539 GTATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTT 8598 || || | || || | || |||| | ||||| ||||| | || ||||| | Sbjct 500151 AAGTCTAATTTTCGTCATCGTCCAATTGGTTTAGGCGTCCAAGGATTTGCTGACGCACTG 500210 Query 8599 GCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAA--AAATAG 8656 | |||| |||||| |||||| || | || || ||| || |||| |||| Sbjct 500211 ATTTTAATGCGTTACCCCTATGAAAGCGAAAATGC-TGCTCGCTTAA-ATAAACAAATTT 500268 Query 8657 CGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAATTGGGCA 8716 ||||| | |||||||| | ||||||| || ||| || | ||| | ||| | Sbjct 500269 TTGAAACAATATATTACGGTGACTTAGAAGGTAGTTGTGAATTGGCCAAACAATACAGTC 500328 Query 8717 CGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGA 8776 |||||||| | || | || || || | || | || | ||||| || |||||| Sbjct 500329 CGTACGAAACATATGAAGGTAGTCCAGTTAGTAAAGCTATCCTTCAATATGATATGTGGG 500388 Query 8777 ATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCG 8836 || ||||| || | | ||||||||| ||| | ||| || | ||| | | Sbjct 500389 ATAAAACGCCTACTGATCTATGGAATTGGTCGGATCTTAAAAGCGACATTAAAAGTTATG 500448 Query 8837 GTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGG 8896 | |||||||||| || | || ||| ||||| || || | ||||||||||| | | Sbjct 500449 GAGTGCGCAATTCCTTGCTAGTAGCTCCAATGCCTACGGCGTCTACTGCTCAAATTCTTG 500508 Query 8897 GAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTACGTGAGACGAGTGTTGGCCG 8956 | ||||| || || |||||||| | ||| || | || |||| || || | | Sbjct 500509 GTAACAATGAGTCTTTTGAGCCATACACTTCAAATATTCACACACGACGCGTACTGTCTG 500568 Query 8957 GCGATTTTTTAATGCTGAATCGTCATTTGATGCGCGACTTGATCGAAGCGGGCGTTTACG 9016 | || ||| | | | |||| ||||||| | || |||| ||| |||| ||| Sbjct 500569 GTGAGTTTATCGTAGTCAATCATCATTTGCTTAAAGATTTGACTGAATTGGGCCTTTGGA 500628 Query 9017 ACGACAAAATGCGCGATGCCATCGTGGAAGCCAAC--GGCAGCGTTCAGAACATTGACGC 9074 | || || ||| | || ||| | || | ||| | || ||||| || || Sbjct 500629 ATGATAACATGAAAAACTTAATATTGGCA--CATCGGGGCTCAATACAAAACATCGAAGC 500686 Query 9075 GGTGCCTCAACACATTAAAGAGCTGTATAAAACCGTTTGGGAAA------TGAAGCAAAG 9128 | ||| || ||| ||||| |||||||||| |||||||||| ||||| || Sbjct 500687 CATACCTGAAAGCATAAAAGAATTGTATAAAACGGTTTGGGAAATTTCGGTGAAGTCAAC 500746 Query 9129 CACGCTGATCGGCATGGCTGCGGATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAA 9188 | ||| |||||||| ||| | || |||||||| || || || ||||| ||||| Sbjct 500747 C------ATCAACATGGCTGTTGATCGCGGAGCTTTTATCGACCAAAGCCAATCATTTAA 500800 Query 9189 CGTGTTCGTAGCCGCACCAACTTACGCTTTGATGTCCAGCATTCATTATTTAACTTGGAA 9248 | | ||||| ||| | ||| | | || || |||| || |||||| Sbjct 500801 CATACATGTAGCTCAACCTAGTTATGGCAAATTATCTTCTATACATTTTTATGGTTGGAA 500860 Query 9249 AATGGGTTTAAAAACAGGCATGTACTATTTGCGCACAAAACCCGCCGCTGAACCTATCAA 9308 | | || |||||||| || ||||| || | | || || || || || | || || | Sbjct 500861 AGTCGGCTTAAAAACCGGTATGTATTACCTAAGAACGAAGCCAGCAGCAAATCCCATACA 500920 Query 9309 ATTTACAGT 9317 |||||||| Sbjct 500921 GTTTACAGT 500929 >seq2 Length=5618958 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || || |||||||| ||||| |||||| | ||| | || || | || ||||| Sbjct 3063902 GTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGCCCATCTTCCAATTGCTTGCCA 3063961 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 || || |||||||| || ||||| || || ||||||||||| || |||||||| ||| Sbjct 3063962 GCGAATATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 3064021 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | |||||||| | || || || | |||||| ||||| || || | |||| Sbjct 3064022 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 3064081 Query 134697 TTAACGAAAATTTGCATTTT 134716 |||||||||||||||||||| Sbjct 3064082 TTAACGAAAATTTGCATTTT 3064101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505387496029520