Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq162 491 6e-134
seq512 297 3e-75
>seq162
Length=626193
Score = 491 bits (544), Expect = 6e-134
Identities = 1257/1887 (67%), Gaps = 36/1887 (2%)
Strand=Plus/Minus
Query 68365 TTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCG 68424
||||| | ||||||||| ||||| | ||| || || || | ||| || |||||||||
Sbjct 500935 TTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATACCG 500876
Query 68425 GTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGA 68484
||||| | || | |||| || || ||||| ||| | || |||| |||||| ||
Sbjct 500875 GTTTTTAAGCCGACTTTCCAACCATAAAAATGTATAGAAGATAATTTGCCATAACTAGGT 500816
Query 68485 TCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCC 68544
| |||| ||| || || | ||||| ||||| ||||| |||||||| | ||| | |||
Sbjct 500815 TGAGCTACATGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCC 500756
Query 68545 ATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCA 68604
|| || || | ||| | ||||||||||| || ||| | | | ||| ||
Sbjct 500755 ATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATGCTT 500696
Query 68605 TCTGG-AAGGC-TCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATC 68661
|| || | ||| ||| | ||||| || || || | || | | |||| || || ||
Sbjct 500695 TCAGGTATGGCTTCGATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTTCATG 500636
Query 68662 TCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGA 68721
| ||||||||| | || || ||| || |||| | ||| |||| |||| |
Sbjct 500635 TTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGATA 500576
Query 68722 AATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCA 68781
|| || ||||| | || | || |||| |||||| || ||||| || | ||| |||
Sbjct 500575 AACTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAAAGACTCA 500516
Query 68782 TTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTT 68841
|| || || |||||||||||||| || || || ||||| || || || | || |||
Sbjct 500515 TTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGGAATTG 500456
Query 68842 CTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGT 68901
| | |||| || | || | ||| |||| ||||| ||| ||||||| ||
Sbjct 500455 CGCACTCCATAACTTTTAATGTCGCTTTTAAGATCCGACCAATTCCATAGATCAGTAGGC 500396
Query 68902 ACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACT---TGCA-TATGATCCATTATA 68957
|| ||| | ||| ||||| || || | ||||| || | || || | |||
Sbjct 500395 GTTTTATCCCACATATCATATTGAAGGATAGCTTTACTAACTGGACTA----CCTTCATA 500340
Query 68958 TGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATA 69017
|||||| || || | | |||| || | ||||||||| | ||||| ||||||||||
Sbjct 500339 TGTTTCGTACGGACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTCACCGTAATA 500280
Query 69018 AATTGTTTCGAAAATCTTCTTATTGAGATCTTG-TGCTTCTAGACTATCGAATGGATAAT 69076
|||||||| ||||| | ||||| | | | | || | | || || | || |||
Sbjct 500279 TATTGTTTCAAAAATTTGTTTATTTA-AGCGAGCAGCATTTTCGCTTTCATAGGGGTAAC 500221
Query 69077 GTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCT 69136
| | | ||| | ||| || || ||||| || || || | ||| || || | ||| |
Sbjct 500220 GCATTAAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAA 500161
Query 69137 TATTTGAACTTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGA 69195
||| | |||||| | ||| || | ||||| ||||| ||||| || ||||| || ||
Sbjct 500160 AATTAG-ACTTTCTGGTTTCCGGCAACGGATAGTAATTGATATCGATTATTTTGTTGAGG 500102
Query 69196 TTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCT--- 69252
|| || | || | || || || |||||| |||||||| || || ||||
Sbjct 500101 TTCTTTGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGTC 500042
Query 69253 ATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTT 69312
| ||||||||||||| || | ||||||| ||| |||||||||| || | ||
Sbjct 500041 GTTACAAACATATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAGCCGAC 499982
Query 69313 GCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGA 69372
| ||||| | || |||||||| | ||||| ||||| ||||| || | ||| || |||
Sbjct 499981 GTATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGA 499922
Query 69373 TTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGA 69432
||||| || ||||| || || |||||||| || | ||||| || || || | ||
Sbjct 499921 TTACTTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTGG 499862
Query 69433 G-ATTCGATAAT-AGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTT-- 69488
| | | ||| | || | | | | | | ||| |||||| || |||| |||||
Sbjct 499861 GCACTGCATATTGCGAACTACTA--GTCACGAGCTTTTATT---GTTTTGT-TCGCTTTG 499808
Query 69489 --CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT 69546
||| | |||||||| | |||| | || |||| ||||| ||| ||| |||
Sbjct 499807 CCCTCGTCTTCATATTTCATGTATAATCTATCAAATTTGTCTCCATAAATTTCACACAAG 499748
Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606
||||| |||| || |||||||| | ||||| |||||| ||| ||||| ||||||
Sbjct 499747 CCAGGGCATTTATGGGGACACATTAGAGACCAATGCTCATCAGCCTCAACTCTTTTCATG 499688
Query 69607 AATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666
|| | |||||| ||||| ||||| ||| | ||| | | | | ||| || |||||
Sbjct 499687 AACAAATCGGGGATCCACAGAGCATAAAATAAATCCCGTGCACGGTCTTCCTCCTTTCCC 499628
Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726
||||| ||||| | | ||||| || | |||||| | |||||| || |||| |||||
Sbjct 499627 GTATTCTTTTTCAAGTTTAGAAATTCGAAAATATCTGCATGCCAAGGCTCTAAGTATATA 499568
Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786
|| | | ||||| ||||| || || || || | || | |||| || || |
Sbjct 499567 GCAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAAC 499508
Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846
| | | ||| |||| || ||| | |||| || | | ||||| || | | | |||
Sbjct 499507 AGACGTAACATAGGAACAAGACCGTCAGATACTTCACTATTACCAGATATCTTAGTCCCT 499448
Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906
||||| || || | |||| |||||||||||| || ||| ||||| ||| ||||
Sbjct 499447 CTTGCTCGTATGCAATGAATATTTAGACCTATTCCACCGGCCGCCTTAGAAATTTTAGCA 499388
Query 69907 CA-ACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCAT-GTTAAGAAGAA 69964
|| || | | ||||| ||||| || ||| || || ||| |||| ||| |
Sbjct 499387 CATTGGTCTATAGCCTTCATA-ATACCATCAATGGAGTCTTCCGGCATAGTTAGCAAG-A 499330
Query 69965 AACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAG 70024
||| |||| ||| | |||| || | ||| |||||| || || || || ||||
Sbjct 499329 CGCAGGACGACAATTGCGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAG 499270
Query 70025 TGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGA 70083
| || | || || | ||||| || ||||||||||| | ||| || || || | |
Sbjct 499269 TAAAGTAACCCTCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGTCACCGCCG- 499211
Query 70084 TGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTT 70143
||||| || || ||||||||||| ||||||||||| || || || || |||| ||
Sbjct 499210 TGAATGCCAATAGCGACACGCATTAACATATGCTGTGGCCGCTCCACAATTTTGCCGTTA 499151
Query 70144 ATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCT 70203
|| || || | || ||| ||| | ||||||||| |||||| | || || ||| ||
Sbjct 499150 ATCTTTAATAAATAAGATCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAATTAAAATCG 499091
Query 70204 CTTTCGTAAATAATAACAGAATTTAGT 70230
| || |||||||| ||||||| |||
Sbjct 499090 CGATCACAAATAATAGCAGAATTCAGT 499064
>seq512
Length=181763
Score = 297 bits (328), Expect = 3e-75
Identities = 505/724 (70%), Gaps = 15/724 (2%)
Strand=Plus/Minus
Query 39434 AATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTC 39493
||||| | | ||| | ||| |||||| ||||||| ||| | ||| |||| | |||
Sbjct 52842 AATTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTC 52783
Query 39494 ATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCC 39553
|| || || | | ||||||| || || || | |||||||||||| || | |||||
Sbjct 52782 ATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGGCA 52723
Query 39554 TCTGTTATTATCGATGTTACTACC--TCATCACTCGGTGGATGCAATAAATGTTTAAACA 39611
|||||||||||| | | || || | ||||||| || | ||||||||||||||
Sbjct 52722 TCTGTTATTATC--TCCAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACA 52665
Query 39612 TTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATG 39671
|||| || || ||||| |||| ||| ||||| | || | ||| ||||| ||||
Sbjct 52664 TTAATACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGAATG 52605
Query 39672 TGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAA 39731
| | || ||||||| ||||| || || ||||||||||| | || || ||| ||
Sbjct 52604 TTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACTAA 52545
Query 39732 AGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT-- 39789
|||| || ||||| || || || || || | | | || || || | | ||
Sbjct 52544 AGAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAATTAGCTGAATGCG 52485
Query 39790 ATG-TATCCACTTCT-GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATA 39847
||| |||||| | || | ||||| || || |||||||| || | |||||||| || |||
Sbjct 52484 ATGATATCCA-TGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATA 52426
Query 39848 GCATTAAAGAGATAAT---GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGA 39904
|||||||| ||||| | ||| || ||| || | | |||||| || || | | |
Sbjct 52425 GCATTAAATAGATATTCACGTTCTTTCTCA---TCCATGATATATGTTTCGATAAGTAAA 52369
Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964
||||||||||| || || | ||||| || || || ||||| || ||||| || | |||
Sbjct 52368 CTATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCT 52309
Query 39965 TCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCA 40024
||||| ||||| |||||| |||||| |||| | ||||| ||||| || || |||||
Sbjct 52308 TCAGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCG 52249
Query 40025 CTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA 40084
|| |||||||| ||||| |||||| |||||||| ||| || | || |
Sbjct 52248 GATGCCGCAAAAAAAGCCAAGACATGTGAAATAAAATGACGTTCGCCGTCACTTAACCGA 52189
Query 40085 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144
||||| || | || ||||| || | || || |||||||| |||||||| || || ||
Sbjct 52188 TTCCAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTCC 52129
Query 40145 GCCT 40148
||||
Sbjct 52128 GCCT 52125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686893979942640
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