Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq162 491 6e-134 seq512 297 3e-75 >seq162 Length=626193 Score = 491 bits (544), Expect = 6e-134 Identities = 1257/1887 (67%), Gaps = 36/1887 (2%) Strand=Plus/Minus Query 68365 TTATCCAATGTAAACTGAATGGGTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCG 68424 ||||| | ||||||||| ||||| | ||| || || || | ||| || ||||||||| Sbjct 500935 TTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATACCG 500876 Query 68425 GTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGA 68484 ||||| | || | |||| || || ||||| ||| | || |||| |||||| || Sbjct 500875 GTTTTTAAGCCGACTTTCCAACCATAAAAATGTATAGAAGATAATTTGCCATAACTAGGT 500816 Query 68485 TCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCC 68544 | |||| ||| || || | ||||| ||||| ||||| |||||||| | ||| | ||| Sbjct 500815 TGAGCTACATGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCC 500756 Query 68545 ATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCA 68604 || || || | ||| | ||||||||||| || ||| | | | ||| || Sbjct 500755 ATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATGCTT 500696 Query 68605 TCTGG-AAGGC-TCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATC 68661 || || | ||| ||| | ||||| || || || | || | | |||| || || || Sbjct 500695 TCAGGTATGGCTTCGATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTTCATG 500636 Query 68662 TCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGA 68721 | ||||||||| | || || ||| || |||| | ||| |||| |||| | Sbjct 500635 TTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGATA 500576 Query 68722 AATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCA 68781 || || ||||| | || | || |||| |||||| || ||||| || | ||| ||| Sbjct 500575 AACTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAAAGACTCA 500516 Query 68782 TTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTT 68841 || || || |||||||||||||| || || || ||||| || || || | || ||| Sbjct 500515 TTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGGAATTG 500456 Query 68842 CTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGT 68901 | | |||| || | || | ||| |||| ||||| ||| ||||||| || Sbjct 500455 CGCACTCCATAACTTTTAATGTCGCTTTTAAGATCCGACCAATTCCATAGATCAGTAGGC 500396 Query 68902 ACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACT---TGCA-TATGATCCATTATA 68957 || ||| | ||| ||||| || || | ||||| || | || || | ||| Sbjct 500395 GTTTTATCCCACATATCATATTGAAGGATAGCTTTACTAACTGGACTA----CCTTCATA 500340 Query 68958 TGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATA 69017 |||||| || || | | |||| || | ||||||||| | ||||| |||||||||| Sbjct 500339 TGTTTCGTACGGACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTCACCGTAATA 500280 Query 69018 AATTGTTTCGAAAATCTTCTTATTGAGATCTTG-TGCTTCTAGACTATCGAATGGATAAT 69076 |||||||| ||||| | ||||| | | | | || | | || || | || ||| Sbjct 500279 TATTGTTTCAAAAATTTGTTTATTTA-AGCGAGCAGCATTTTCGCTTTCATAGGGGTAAC 500221 Query 69077 GTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCT 69136 | | | ||| | ||| || || ||||| || || || | ||| || || | ||| | Sbjct 500220 GCATTAAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAA 500161 Query 69137 TATTTGAACTTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGA 69195 ||| | |||||| | ||| || | ||||| ||||| ||||| || ||||| || || Sbjct 500160 AATTAG-ACTTTCTGGTTTCCGGCAACGGATAGTAATTGATATCGATTATTTTGTTGAGG 500102 Query 69196 TTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGTCCATCT--- 69252 || || | || | || || || |||||| |||||||| || || |||| Sbjct 500101 TTCTTTGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGTC 500042 Query 69253 ATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTT 69312 | ||||||||||||| || | ||||||| ||| |||||||||| || | || Sbjct 500041 GTTACAAACATATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAGCCGAC 499982 Query 69313 GCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGA 69372 | ||||| | || |||||||| | ||||| ||||| ||||| || | ||| || ||| Sbjct 499981 GTATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGA 499922 Query 69373 TTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGA 69432 ||||| || ||||| || || |||||||| || | ||||| || || || | || Sbjct 499921 TTACTTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTGG 499862 Query 69433 G-ATTCGATAAT-AGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTT-- 69488 | | | ||| | || | | | | | | ||| |||||| || |||| ||||| Sbjct 499861 GCACTGCATATTGCGAACTACTA--GTCACGAGCTTTTATT---GTTTTGT-TCGCTTTG 499808 Query 69489 --CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAAT 69546 ||| | |||||||| | |||| | || |||| ||||| ||| ||| ||| Sbjct 499807 CCCTCGTCTTCATATTTCATGTATAATCTATCAAATTTGTCTCCATAAATTTCACACAAG 499748 Query 69547 CCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATA 69606 ||||| |||| || |||||||| | ||||| |||||| ||| ||||| |||||| Sbjct 499747 CCAGGGCATTTATGGGGACACATTAGAGACCAATGCTCATCAGCCTCAACTCTTTTCATG 499688 Query 69607 AATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCT 69666 || | |||||| ||||| ||||| ||| | ||| | | | | ||| || ||||| Sbjct 499687 AACAAATCGGGGATCCACAGAGCATAAAATAAATCCCGTGCACGGTCTTCCTCCTTTCCC 499628 Query 69667 GTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 69726 ||||| ||||| | | ||||| || | |||||| | |||||| || |||| ||||| Sbjct 499627 GTATTCTTTTTCAAGTTTAGAAATTCGAAAATATCTGCATGCCAAGGCTCTAAGTATATA 499568 Query 69727 GCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAG 69786 || | | ||||| ||||| || || || || | || | |||| || || | Sbjct 499567 GCAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAAC 499508 Query 69787 ACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCT 69846 | | | ||| |||| || ||| | |||| || | | ||||| || | | | ||| Sbjct 499507 AGACGTAACATAGGAACAAGACCGTCAGATACTTCACTATTACCAGATATCTTAGTCCCT 499448 Query 69847 CTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 69906 ||||| || || | |||| |||||||||||| || ||| ||||| ||| |||| Sbjct 499447 CTTGCTCGTATGCAATGAATATTTAGACCTATTCCACCGGCCGCCTTAGAAATTTTAGCA 499388 Query 69907 CA-ACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCAT-GTTAAGAAGAA 69964 || || | | ||||| ||||| || ||| || || ||| |||| ||| | Sbjct 499387 CATTGGTCTATAGCCTTCATA-ATACCATCAATGGAGTCTTCCGGCATAGTTAGCAAG-A 499330 Query 69965 AACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAG 70024 ||| |||| ||| | |||| || | ||| |||||| || || || || |||| Sbjct 499329 CGCAGGACGACAATTGCGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAG 499270 Query 70025 TGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGA 70083 | || | || || | ||||| || ||||||||||| | ||| || || || | | Sbjct 499269 TAAAGTAACCCTCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGTCACCGCCG- 499211 Query 70084 TGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTT 70143 ||||| || || ||||||||||| ||||||||||| || || || || |||| || Sbjct 499210 TGAATGCCAATAGCGACACGCATTAACATATGCTGTGGCCGCTCCACAATTTTGCCGTTA 499151 Query 70144 ATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCT 70203 || || || | || ||| ||| | ||||||||| |||||| | || || ||| || Sbjct 499150 ATCTTTAATAAATAAGATCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAATTAAAATCG 499091 Query 70204 CTTTCGTAAATAATAACAGAATTTAGT 70230 | || |||||||| ||||||| ||| Sbjct 499090 CGATCACAAATAATAGCAGAATTCAGT 499064 >seq512 Length=181763 Score = 297 bits (328), Expect = 3e-75 Identities = 505/724 (70%), Gaps = 15/724 (2%) Strand=Plus/Minus Query 39434 AATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTC 39493 ||||| | | ||| | ||| |||||| ||||||| ||| | ||| |||| | ||| Sbjct 52842 AATTCCAATAGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTC 52783 Query 39494 ATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCC 39553 || || || | | ||||||| || || || | |||||||||||| || | ||||| Sbjct 52782 ATGCCAATTAAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGGCA 52723 Query 39554 TCTGTTATTATCGATGTTACTACC--TCATCACTCGGTGGATGCAATAAATGTTTAAACA 39611 |||||||||||| | | || || | ||||||| || | |||||||||||||| Sbjct 52722 TCTGTTATTATC--TCCAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACA 52665 Query 39612 TTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATG 39671 |||| || || ||||| |||| ||| ||||| | || | ||| ||||| |||| Sbjct 52664 TTAATACCGCAAATTCACAGTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGAATG 52605 Query 39672 TGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAA 39731 | | || ||||||| ||||| || || ||||||||||| | || || ||| || Sbjct 52604 TTAAACCTGGCATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACTAA 52545 Query 39732 AGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT-- 39789 |||| || ||||| || || || || || | | | || || || | | || Sbjct 52544 AGAAAATACCTTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAATTAGCTGAATGCG 52485 Query 39790 ATG-TATCCACTTCT-GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATA 39847 ||| |||||| | || | ||||| || || |||||||| || | |||||||| || ||| Sbjct 52484 ATGATATCCA-TGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATA 52426 Query 39848 GCATTAAAGAGATAAT---GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGA 39904 |||||||| ||||| | ||| || ||| || | | |||||| || || | | | Sbjct 52425 GCATTAAATAGATATTCACGTTCTTTCTCA---TCCATGATATATGTTTCGATAAGTAAA 52369 Query 39905 CTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCT 39964 ||||||||||| || || | ||||| || || || ||||| || ||||| || | ||| Sbjct 52368 CTATACATTTCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCT 52309 Query 39965 TCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCA 40024 ||||| ||||| |||||| |||||| |||| | ||||| ||||| || || ||||| Sbjct 52308 TCAGTTATTTGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCG 52249 Query 40025 CTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTA 40084 || |||||||| ||||| |||||| |||||||| ||| || | || | Sbjct 52248 GATGCCGCAAAAAAAGCCAAGACATGTGAAATAAAATGACGTTCGCCGTCACTTAACCGA 52189 Query 40085 TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCT 40144 ||||| || | || ||||| || | || || |||||||| |||||||| || || || Sbjct 52188 TTCCAATCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTCC 52129 Query 40145 GCCT 40148 |||| Sbjct 52128 GCCT 52125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686893979942640