Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_027335.1 Length=145518 Score E Sequences producing significant alignments: (Bits) Value seq771 91.5 1e-13 >seq771 Length=5339 Score = 91.5 bits (100), Expect = 1e-13 Identities = 371/572 (65%), Gaps = 32/572 (6%) Strand=Plus/Minus Query 107140 TTATGAAAATGCTAGAAGACGGTTTCCGGTACGCAAATCAGTTAGGGCAAAGACAAGGTG 107199 |||||||||| ||||||| | ||| || || ||||| ||||| | ||||||| | Sbjct 2582 TTATGAAAATCTTAGAAGATGCTTTTTCTTATGCTAATCAATTAGGTGCACGACAAGGAG 2523 Query 107200 CAGGCGCAGTCTATCTAAATGTTTTCCATGCGGATATTATGGACTTTTTATCAACTAGAA 107259 | || || || ||| || ||| | ||| | |||||| || | |||||| |||| || Sbjct 2522 CTGGAGCCGTATATTTACATGCTCATCATCCTGATATTTTGAAGTTTTTAGATACTAAAA 2463 Query 107260 AAGAAAATGCAGAATCCGCAAAGCA-AATCAAAACACTTTCTTTGGGAGTAGTTGTTCCC 107318 |||||||||| | || ||| || ||| ||||| || ||||| || || | |||| Sbjct 2462 AAGAAAATGCTG-ATGAAAAAACCAGAATAAAAACCCTATCTTTAGGTGTTATCATTCCT 2404 Query 107319 GATA--AATTTT--ATGAGCTAGCTGAGTCTGGGGATGTAATTCACTTATTTTCTCCATA 107374 |||| | |||| || ||| | | | | | ||| | || ||||||||||| Sbjct 2403 GATATTACTTTTCAATTAGCAAAAGAAAAC----AAAGAAATGTATTTGTTTTCTCCATA 2348 Query 107375 TGATGTTGCTAAAGAATACGGTGTACCATTCTCATTTGTAGACATTGAT--TCAGAATAC 107432 ||| ||| |||| || | |||||| || | |||||| | || || Sbjct 2347 CGATATTGAAAAAGTTTATCATCGACCATTTTC-------GGAATTGATTATTAGCGAAC 2295 Query 107433 AATAACATGATTCAGAACCCAA-AT------ATCAGAAGTAAGGTAATGAATGCACGAGA 107485 || ||| ||| | | ||| || || | || | | ||| ||||| || | Sbjct 2294 TTTATCATAATT--TATCTCAAGATAGTCGGATTAAAAAAATCGCAATTAATGCGCGTAA 2237 Query 107486 TTTGGAAGAAGAAATTAGCCG-TTTACAACAAGAGTCAGGTTACCCATATATTATGAATG 107544 ||| || |||||||| | | ||| || || || ||||||||||||||| | Sbjct 2236 TTTTTTTCAA-AAATTAGCTGAAATTCAATTTGAATCCGGATACCCATATATTATGTTCG 2178 Query 107545 TTAGTACTGTAAATAAAGCCAATCCTATTGATGGCAAAATCATTATGAGTAATTTATGCA 107604 ||| |||||| | ||||||||| ||| | || | ||||||||||||||| Sbjct 2177 AAGATACCGTAAATCGTACTAATCCTATTTTTGGGCATATTAATATGAGTAATTTATGTT 2118 Query 107605 GTGAAATATTACAGGTACAGACACCATCTAAGCTAAATGATGA-ACAAGTATACGAAGAG 107663 |||||| ||||| ||| | | || || | ||||| || |||| || || | Sbjct 2117 CTGAAATTTTACAAGTAAATAGCCCTTCAGAATACAATGAAGACTTAAGT-TATAAAAAA 2059 Query 107664 TTAGGTACAGACATTAGCTGTAATTTAGGTTC 107695 |||| ||||| || ||||||||||| || Sbjct 2058 ATAGGAACAGATATATCTTGTAATTTAGGATC 2027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 465519556198880