Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq347 345 1e-90 seq367 104 6e-18 >seq347 Length=3601 Score = 345 bits (382), Expect = 1e-90 Identities = 641/936 (68%), Gaps = 6/936 (1%) Strand=Plus/Minus Query 19738 ATATGCTCATGGTTATTTTCTACCTTTCTTCAAAATATACTTAGGTCTTGATTTTGTTTC 19797 || || |||| |||| | ||| ||| | || ||| ||||||| ||||||||| Sbjct 2903 ATGTGTTCATAGTTAATGTCTCTTTTTAGCTATAACATATCTAGGTCTGTTTTTTGTTTC 2844 Query 19798 TAAGTAAATTCTACCTATATATTCACCGAGAACACCAATCCCGATCAGTTGCACTCCACC 19857 | || |||| || ||||||||||| || || || || ||||| | |||||||||||| Sbjct 2843 AATATATATTCGTCCAATATATTCACCCAGCACCCCGATACCGATTAATTGCACTCCACC 2784 Query 19858 CAAGAAAAGTATTGATACAAGCAGGGAGGGATACCCGCGTACTGGGTTACCAAAGACAAG 19917 | || || || | ||| | || || ||||| || | |||||||||||||| | | Sbjct 2783 AATAAATAGAATGGCTACCATCAATGATGGATAACCTGGGACTGGGTTACCAAATAGTAA 2724 Query 19918 GGTGTCTATAATCATCCATGCACCATATAAAAATGAAATGCTTGCAACAAACAAGCCTAT 19977 |||| | |||||||| ||||||| ||| |||| || ||| || || || Sbjct 2723 TTTGTCAACCGTCATCCATAGGCCATATAGAAAAGAAAGTGAAGCGACACCAAAACCGAT 2664 Query 19978 ATAAGTCCATACGCGAAGAGGAAAGGTTGAAAAACTTGTGATACCTTCCAGTGCCAGATT 20037 ||| ||||| | | | ||| | ||||||||| ||| || ||||| || || | ||| Sbjct 2663 ATACGTCCACATTCTTAAAGGGATAGTTGAAAAAGATGTTATCCCTTCAAGAGCTAAATT 2604 Query 20038 CCATAATTTCCAGCCATTAAATTTTGA-GATGCCAGCAACACGCTCTGCGCGTACATATT 20096 |||||||||||| | | |||| || ||| || || ||||| || || ||| Sbjct 2603 CCATAATTTCCACCAACTAAACTTGCTTGAT-CCGGCTGATCGCTCAGCACGAGTGTATG 2545 Query 20097 CAACGACATCCGTCTGACCACCCACCCAGCTCAGTATGCCTTTCATGAAAAGATTGCGCT 20156 ||| | || | || | || ||| ||| | |||||||||||||| || || | Sbjct 2544 TAACCATTTCTACTTTTCCGCTCATCCATGACAGCAAACCTTTCATGAAAAGGTTACGTT 2485 Query 20157 CAGGCAACAGTTTAATGTTCTCCACAACCTCACGAGACATGAGTCGAAAATCTCCGACAT 20216 ||||||| |||| || || || || ||||| || || | ||||| || || |||| Sbjct 2484 CAGGCAAACACGTAATATTTTCTACGACTTCACGTGATATCAAACGAAAGTCACCAACAT 2425 Query 20217 TTTCCTCGATCTTTGGGGTGCTTATTTTGTTGTGTAATTTATAGAACCACTCAGCTGTCT 20276 ||| || || ||| | ||||| ||||||||||||| | | || ||||| || || || | Sbjct 2424 GTTCTTCAATTTTTTGCGTGCTGATTTTGTTGTGTAGTCTGTAAAACCATTCTGCCGTTT 2365 Query 20277 TACGTTTCAGTCGTCCATCAGTTGAGCGGTCTGAACGTTTAGCAAGCACCATGTCAGCAC 20336 | || || | | |||||||| | ||||| |||||||| || || | ||||||| Sbjct 2364 TTCGCTTTAATTTCCCATCAGTCGTACGGTCAATGCGTTTAGCCAGTACAACATCAGCAC 2305 Query 20337 CTGCCTGCCACTTTTCAATAAGATGAGGGATAACCTCAATTGGGTCTTGCAGGTCGACAT 20396 |||| ||||||| ||||| | || || || | | | || |||| | || |||| Sbjct 2304 CTGCTCGCCACTTCTCAATCATCTGTGGTATGATATTTAACGGATCTTATAAATCTACAT 2245 Query 20397 CAATAGGAATTACAGCATCGCCGCTTGCATGGTCTAACCCTGCAAATAAGGCTGGTTCTT 20456 |||| | || | ||||| || | ||||| ||||| ||||| || | || ||||||| Sbjct 2244 CAATGGATATAATTGCATCTCCAGTGGCATGTTCTAATCCTGCGAAAAGTGCAGGTTCTT 2185 Query 20457 TACCAAAGTTGCGTGTAAA--TGACAGCGGAACAACTAGCGGGTCTGAAACAGCCAGCGC 20514 |||||||||| || ||||| ||| ||| ||| | || || || | | | | Sbjct 2184 TACCAAAGTTTCGAGTAAAGCTGATAGC--CTTAACCATTGGATCAGATATTTCTAATAC 2127 Query 20515 GTTAATAATTGACTCTGTGGCATCTTTACTTCCGTCATTTATGAATACAATTTCTACTTC 20574 ||||| | ||| || ||| |||| || ||||| ||||| || | |||| | Sbjct 2126 ATTAATCAAGCTCTCAGTATTGTCTGTACTACCATCATTAATGAACACTACCTCTATATT 2067 Query 20575 ATATGGCTTCAACTCTTGGAATTCACGTACCGTTTTATAGAAAACAGGTATCGCTTCTTC 20634 |||| | || | |||| | ||||| | ||||| |||||| |||| ||||| | || ||| Sbjct 2066 ATATTGATTTAGCTCTGGAAATTCTCTTACCGATTTATAAAAAATCGGTATGGATTTTTC 2007 Query 20635 TTCATTGAAGACAGGAACGACAAGAGATATTTTCAT 20670 |||||| || ||||| || || | || || ||||| Sbjct 2006 TTCATTAAAAACAGGGACAACTAACGAAATCTTCAT 1971 >seq367 Length=84945 Score = 104 bits (114), Expect = 6e-18 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 14041 GACTTTGAAGCCAGACAACGGGCGGCGCGGACGGATGAAACCACCTACGTGGTGCAGGGC 14100 || |||||||| ||||||||| || | || || ||||||||||| || |||||| Sbjct 9627 GAATTTGAAGCACAACAACGGGCCGCCAGAACCGAAGAAACCACCTATACCGTACAGGGC 9686 Query 14101 TGGCGACAGGGTAACGGTACGCTGTGGCAGCCCAACCAGCGGGTGATTGTCTTTGATCCG 14160 ||||| || ||| |||| | |||||| | || |||||||| || || |||||||| || Sbjct 9687 TGGCGGCAAGGTGACGGCAGTCTGTGGAAACCTAACCAGCGAGTTATCGTCTTTGACCCC 9746 Query 14161 GTCTGTGGTTTCGACAATACCGAACTG 14187 || | ||||| |||||| |||||| Sbjct 9747 GTGTTAGGTTTTAACAATAGGGAACTG 9773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122720684634612