Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_027339.1
Length=38389
Score E
Sequences producing significant alignments: (Bits) Value
seq347 345 1e-90
seq367 104 6e-18
>seq347
Length=3601
Score = 345 bits (382), Expect = 1e-90
Identities = 641/936 (68%), Gaps = 6/936 (1%)
Strand=Plus/Minus
Query 19738 ATATGCTCATGGTTATTTTCTACCTTTCTTCAAAATATACTTAGGTCTTGATTTTGTTTC 19797
|| || |||| |||| | ||| ||| | || ||| ||||||| |||||||||
Sbjct 2903 ATGTGTTCATAGTTAATGTCTCTTTTTAGCTATAACATATCTAGGTCTGTTTTTTGTTTC 2844
Query 19798 TAAGTAAATTCTACCTATATATTCACCGAGAACACCAATCCCGATCAGTTGCACTCCACC 19857
| || |||| || ||||||||||| || || || || ||||| | ||||||||||||
Sbjct 2843 AATATATATTCGTCCAATATATTCACCCAGCACCCCGATACCGATTAATTGCACTCCACC 2784
Query 19858 CAAGAAAAGTATTGATACAAGCAGGGAGGGATACCCGCGTACTGGGTTACCAAAGACAAG 19917
| || || || | ||| | || || ||||| || | |||||||||||||| | |
Sbjct 2783 AATAAATAGAATGGCTACCATCAATGATGGATAACCTGGGACTGGGTTACCAAATAGTAA 2724
Query 19918 GGTGTCTATAATCATCCATGCACCATATAAAAATGAAATGCTTGCAACAAACAAGCCTAT 19977
|||| | |||||||| ||||||| ||| |||| || ||| || || ||
Sbjct 2723 TTTGTCAACCGTCATCCATAGGCCATATAGAAAAGAAAGTGAAGCGACACCAAAACCGAT 2664
Query 19978 ATAAGTCCATACGCGAAGAGGAAAGGTTGAAAAACTTGTGATACCTTCCAGTGCCAGATT 20037
||| ||||| | | | ||| | ||||||||| ||| || ||||| || || | |||
Sbjct 2663 ATACGTCCACATTCTTAAAGGGATAGTTGAAAAAGATGTTATCCCTTCAAGAGCTAAATT 2604
Query 20038 CCATAATTTCCAGCCATTAAATTTTGA-GATGCCAGCAACACGCTCTGCGCGTACATATT 20096
|||||||||||| | | |||| || ||| || || ||||| || || |||
Sbjct 2603 CCATAATTTCCACCAACTAAACTTGCTTGAT-CCGGCTGATCGCTCAGCACGAGTGTATG 2545
Query 20097 CAACGACATCCGTCTGACCACCCACCCAGCTCAGTATGCCTTTCATGAAAAGATTGCGCT 20156
||| | || | || | || ||| ||| | |||||||||||||| || || |
Sbjct 2544 TAACCATTTCTACTTTTCCGCTCATCCATGACAGCAAACCTTTCATGAAAAGGTTACGTT 2485
Query 20157 CAGGCAACAGTTTAATGTTCTCCACAACCTCACGAGACATGAGTCGAAAATCTCCGACAT 20216
||||||| |||| || || || || ||||| || || | ||||| || || ||||
Sbjct 2484 CAGGCAAACACGTAATATTTTCTACGACTTCACGTGATATCAAACGAAAGTCACCAACAT 2425
Query 20217 TTTCCTCGATCTTTGGGGTGCTTATTTTGTTGTGTAATTTATAGAACCACTCAGCTGTCT 20276
||| || || ||| | ||||| ||||||||||||| | | || ||||| || || || |
Sbjct 2424 GTTCTTCAATTTTTTGCGTGCTGATTTTGTTGTGTAGTCTGTAAAACCATTCTGCCGTTT 2365
Query 20277 TACGTTTCAGTCGTCCATCAGTTGAGCGGTCTGAACGTTTAGCAAGCACCATGTCAGCAC 20336
| || || | | |||||||| | ||||| |||||||| || || | |||||||
Sbjct 2364 TTCGCTTTAATTTCCCATCAGTCGTACGGTCAATGCGTTTAGCCAGTACAACATCAGCAC 2305
Query 20337 CTGCCTGCCACTTTTCAATAAGATGAGGGATAACCTCAATTGGGTCTTGCAGGTCGACAT 20396
|||| ||||||| ||||| | || || || | | | || |||| | || ||||
Sbjct 2304 CTGCTCGCCACTTCTCAATCATCTGTGGTATGATATTTAACGGATCTTATAAATCTACAT 2245
Query 20397 CAATAGGAATTACAGCATCGCCGCTTGCATGGTCTAACCCTGCAAATAAGGCTGGTTCTT 20456
|||| | || | ||||| || | ||||| ||||| ||||| || | || |||||||
Sbjct 2244 CAATGGATATAATTGCATCTCCAGTGGCATGTTCTAATCCTGCGAAAAGTGCAGGTTCTT 2185
Query 20457 TACCAAAGTTGCGTGTAAA--TGACAGCGGAACAACTAGCGGGTCTGAAACAGCCAGCGC 20514
|||||||||| || ||||| ||| ||| ||| | || || || | | | |
Sbjct 2184 TACCAAAGTTTCGAGTAAAGCTGATAGC--CTTAACCATTGGATCAGATATTTCTAATAC 2127
Query 20515 GTTAATAATTGACTCTGTGGCATCTTTACTTCCGTCATTTATGAATACAATTTCTACTTC 20574
||||| | ||| || ||| |||| || ||||| ||||| || | |||| |
Sbjct 2126 ATTAATCAAGCTCTCAGTATTGTCTGTACTACCATCATTAATGAACACTACCTCTATATT 2067
Query 20575 ATATGGCTTCAACTCTTGGAATTCACGTACCGTTTTATAGAAAACAGGTATCGCTTCTTC 20634
|||| | || | |||| | ||||| | ||||| |||||| |||| ||||| | || |||
Sbjct 2066 ATATTGATTTAGCTCTGGAAATTCTCTTACCGATTTATAAAAAATCGGTATGGATTTTTC 2007
Query 20635 TTCATTGAAGACAGGAACGACAAGAGATATTTTCAT 20670
|||||| || ||||| || || | || || |||||
Sbjct 2006 TTCATTAAAAACAGGGACAACTAACGAAATCTTCAT 1971
>seq367
Length=84945
Score = 104 bits (114), Expect = 6e-18
Identities = 111/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 14041 GACTTTGAAGCCAGACAACGGGCGGCGCGGACGGATGAAACCACCTACGTGGTGCAGGGC 14100
|| |||||||| ||||||||| || | || || ||||||||||| || ||||||
Sbjct 9627 GAATTTGAAGCACAACAACGGGCCGCCAGAACCGAAGAAACCACCTATACCGTACAGGGC 9686
Query 14101 TGGCGACAGGGTAACGGTACGCTGTGGCAGCCCAACCAGCGGGTGATTGTCTTTGATCCG 14160
||||| || ||| |||| | |||||| | || |||||||| || || |||||||| ||
Sbjct 9687 TGGCGGCAAGGTGACGGCAGTCTGTGGAAACCTAACCAGCGAGTTATCGTCTTTGACCCC 9746
Query 14161 GTCTGTGGTTTCGACAATACCGAACTG 14187
|| | ||||| |||||| ||||||
Sbjct 9747 GTGTTAGGTTTTAACAATAGGGAACTG 9773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 122720684634612
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |