Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq512 223 3e-53 seq26 123 2e-23 seq248 109 4e-19 >seq512 Length=181763 Score = 223 bits (246), Expect = 3e-53 Identities = 491/724 (68%), Gaps = 24/724 (3%) Strand=Plus/Plus Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCA 43816 || || |||||||| || ||||| ||||| | |||||||| | | |||||| | Sbjct 52133 GCCTCTTTTTGGACTGCTGAAGAGGTTGACCTCTCTAAAGACATGGACGATTGGAATCGG 52192 Query 43817 TTAAA--ACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCG 43874 |||| || | ||| |||||||| || || ||||| |||||||| || || Sbjct 52193 TTAAGTGACGGC--GAACGTCATTTTATTTCACATGTCTTGGCTTTTTTTGCGGCATCCG 52250 Query 43875 ACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAG 43934 | || || || ||||| ||||| || || ||| | ||||| |||||| || | |||| Sbjct 52251 ATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAATAACTGAAG 52310 Query 43935 CACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTC 43994 | || || |||||||| |||||||||||||| |||||| | || ||||||||||| ||| Sbjct 52311 CTCGTTGCTTTTATGGTTTTCAAATTGCCATGGAAAATGTGCACTCGGAAATGTATAGTT 52370 Query 43995 TTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGAT---TGTTTAATGCGA 44051 | || || || || || |||| |||| | | |||| | | || | |||||||| | Sbjct 52371 TACTTATCGAAACATATATCATGGATGAGAA--AGAA-CGTGAATATCTATTTAATGCTA 52427 Query 44052 TAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAA 44111 | || ||| | || | |||| | || || || ||||| || ||||||| || Sbjct 52428 TTGAGACAATGCCATTGGTTAAGAAGAAGGCGGAATGGGCTCTAGCATGGATATCATCGC 52487 Query 44112 AT---GATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTT 44168 || | | |||||| ||||| | | || || || | || ||||| ||||||||| Sbjct 52488 ATTCAGCTAATTTTGGTGAACGTGTCATAGCTTTCGCTGCCGTCGAAGGTATTTTCTTTA 52547 Query 44169 CAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGT 44228 || || || | ||||||||| |||||||||| || | ||||| || || || | Sbjct 52548 GTGGCAGCTTCGCATCGATATTTTGGCTAAAGAAACGTGGAATAATGCCAGGTTTAACAT 52607 Query 44229 TTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTAC 44288 | || ||||| | ||| || |||||||||||||| || || ||||| || | Sbjct 52608 TCTCTAATGAAATGATATCACGCGATGAAGGCTTACACTGTGAATTTGCGGTATTAATGT 52667 Query 44289 TTGGATATCTAGGAGACGATAAGC-CTTCATGTAAGACAATTACAGATATTGTTGTAGAG 44347 || | || || | || | || | | | | | | ||| || || | ||| Sbjct 52668 TTAAACATTTA--ATACAAAAACCGAGTAAAGAACG--GATTTTGGAGATAATAACAGAT 52723 Query 44348 GCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATG 44407 || || || || ||| |||| ||| ||||| ||| ||||| || | ||||| || ||| Sbjct 52724 GCCGTGAAAATTGAAAAAGAGTTTTTGACAGAAGCCTTACCAGTCGACTTAATTGGCATG 52783 Query 44408 AA---TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAA 44464 || ||| | || || | ||||||| ||||| |||| |||||||| || |||||| Sbjct 52784 AACAGCGAAAGTATG-TGTA--AATATATAGAATATGTTGCCGATCGTTTGCTATTGGAA 52840 Query 44465 CTGG 44468 ||| Sbjct 52841 TTGG 52844 >seq26 Length=2133956 Score = 123 bits (136), Expect = 2e-23 Identities = 277/416 (67%), Gaps = 0/416 (0%) Strand=Plus/Plus Query 41004 CGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCT 41063 || ||||| || |||| | | ||||||||| || ||| ||||| || ||||| Sbjct 713272 CGGCGTATGATTTTGTCCTCTTGGAACCCAGTAGATATACCAAAAATGGCCTTACCACCC 713331 Query 41064 TGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAA 41123 || |||| || ||||| || || |||| ||| |||||||||||| | ||||| Sbjct 713332 TGCCATTGCTTGGCCCAGTTCTATGTAGCCAATAATGAGCTGTCATGTCAACTTTATCAG 713391 Query 41124 AGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACG 41183 | | || ||||| || || ||||| ||||| ||||| ||||| | | ||| Sbjct 713392 CGCAGTGCCGATATGGGGCTGGGTGTCCCATTTAATATAGCATCGTATGCATTATTAACG 713451 Query 41184 TATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGAT 41243 | |||||||||||| | ||| ||||||| || || ||||| ||||| || ||| Sbjct 713452 TCTATGATTGCACATCTAACCGGCCTAAAACCAGGCGATTTTGTACACACTACCGGCGAT 713511 Query 41244 GGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGA 41303 || ||||| | | || || | || || | ||| ||| | ||||| ||||| Sbjct 713512 ACGCACATTTATAAAACGCATATCCAACCATTGAAAGAGCAATTAACACGCAAACCGCAT 713571 Query 41304 CCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAACATTGATGATTTTTGCATCGAT 41363 |||| || | | | || ||||| || || ||||| ||||| ||||| | | Sbjct 713572 GCATTCCCTAAATTGATAATAAAACGTGCCGTGGAAAATATTGAGGATTTCAAGTACTCT 713631 Query 41364 GATTTTGTCGTTTGCGATTACAATCCGTACCCTAAAATCCACATGGACATGTCTGT 41419 ||||| | || || || ||||| || || ||||| || ||||| ||| |||| Sbjct 713632 GATTTCGAAATTGTGGACTATAATCCCTATCCAAAAATTCAAATGGAAATGGCTGT 713687 >seq248 Length=388190 Score = 109 bits (120), Expect = 4e-19 Identities = 223/330 (68%), Gaps = 6/330 (2%) Strand=Plus/Plus Query 19612 GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTG 19671 ||||| || |||||||| || |||||| | || | ||| | ||||| || | ||| || Sbjct 208296 GGAGTCCACGACACTGTAGTTAATCAATTGTTGGCTAAAATCGACGGAGTGGAGCAATTG 208355 Query 19672 AATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTA 19731 |||||||||||||||||||| ||||| ||| | | || | || || || ||| || Sbjct 208356 AATAATATTTTAGTTATTGGTATGACAAATCGCCGTGACATGATTGATGAGGCTTTACTA 208415 Query 19732 CGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTG 19791 || || || || |||||| | | || ||||| | || || | ||| |||| | || Sbjct 208416 CGTCCTGGCCGCTTGGAAGTGCAAATGGAAATCAGTTTGCCTAACGAAGTTGGAAGAGTA 208475 Query 19792 GAAATTTTAAACATACATACATCAACCATGCGACA---AAATAACCTTTTAAATGACGAT 19848 ||||| |||| || || || | ||||| | ||||| || || ||| Sbjct 208476 CAAATTCTAAATATTCACACGAAACGTATGCGTGATTTTAATAAAATT---GCTGGAGAT 208532 Query 19849 GTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGAGGGA 19908 || ||| ||||||| || | |||||| || | || ||||| ||| | || || Sbjct 208533 GTGGATACGAAAGAAATCGCTACCCTTACCAAGAATTTCAGTGGCGCTGAATTGGAAGGC 208592 Query 19909 TTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 ||||| | || |||||||| | ||| ||| Sbjct 208593 TTAGTACGTGCTGCCCAATCTACTGCTATG 208622 Score = 91.5 bits (100), Expect = 1e-13 Identities = 194/287 (68%), Gaps = 6/287 (2%) Strand=Plus/Plus Query 19243 ATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGTGTCGCGTGTT 19302 || || || ||| |||||| || || || || ||| | || |||| || | || Sbjct 207861 ATCGGCGGCTTGGATAAAGAATTCAATGCTATTTTCCGTCGTGCTTTTGCTTCAAGAGTC 207920 Query 19303 TTTTCTGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTAT 19362 ||| || | || || || |||| |||| || || ||||| || ||||||| ||| Sbjct 207921 TTTCCTCCCGAAGTGGTTGAACAGCTGGGTTGCAAGCATGTCAAAGGTATTTTGCTGTAT 207980 Query 19363 GGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAA 19422 || || || ||| || ||||| || || || | || | | || || | || Sbjct 207981 GGACCTCCTGGTACCGGTAAAACCTTGATGGCTCGCCAAATAGGCAA--TATGTTGAATG 208038 Query 19423 CAACCT---CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCG 19479 | | | || |||||||||||||| ||| || | ||| |||||||||| || |||| Sbjct 208039 CT-CGTGAACCAAAAATTGTAAATGGCCCTCAAGTATTAGATAAATATGTTGGCGAATCC 208097 Query 19480 GAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAA 19526 |||| ||| || |||| ||||| || || ||||| |||||| |||| Sbjct 208098 GAAGCTAATATAAGACGGTTGTTCGCCGAAGCTGAGGAAGAAGAAAA 208144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397447639264630