Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq162 84.2 3e-11
seq8 84.2 3e-11
>seq162
Length=626193
Score = 84.2 bits (92), Expect = 3e-11
Identities = 233/351 (66%), Gaps = 5/351 (1%)
Strand=Plus/Minus
Query 111041 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 111100
||||| | | | || || | ||||| || || |||||||| || | || || | ||||
Sbjct 500215 AAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAAATTA 500156
Query 111101 GACTTTCGCGCAGTCT-CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 111159
||||||| | | |||||| ||| |||| | || || | | ||| || || ||
Sbjct 500155 GACTTTCTGGTTTCCGGCAACGG-ATAGTAATTGATATCGATTATTTTGTTGAGGTTCTT 500097
Query 111160 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 111219
|| | || ||||| | ||| | ||||| | | ||||| | || ||| | | ||
Sbjct 500096 TGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATAT-TGTTTATCTGT-CGTT 500039
Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279
||| || | | || |||||||| ||||||||||| || | || || ||
Sbjct 500038 -ACAAACATATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAGCCGACGT 499980
Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339
|| || | ||||||||||| ||||| | || || || || | ||||| ||| ||
Sbjct 499979 ATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATT 499920
Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 111390
||| || || || ||||| ||||| |||||||| || || || |||||
Sbjct 499919 ACTTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTC 499869
>seq8
Length=3216730
Score = 84.2 bits (92), Expect = 3e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 11623 GCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTC 11682
||| ||||| || || |||||||| |||| ||| || || ||||| ||||| | | |
Sbjct 2008957 GCCTACCGCGTCTATTTCATCAATAAAGAGAATGCAAGGAGCATTTTTACGGGCCAATGC 2009016
Query 11683 AAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGC 11742
||| | |||||| || || | |||||| ||||||||||| || | || | | |
Sbjct 2009017 AAACATATCGCGCACTCTCGATGGACCCACGCCAACAAACATTTCTAAGAATTCGGAACC 2009076
Query 11743 AGAG-CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 11801
|||| || | ||| ||||| ||||| | ||| || || | || || || ||||| |
Sbjct 2009077 AGAGACAGT-GATAAATGGCACATTAGCTTCTCCTGCAGTCGCCTTTGCTAGTAGGGTTT 2009135
Query 11802 TTCCCGTACCTGG 11814
| || ||||||||
Sbjct 2009136 TGCCAGTACCTGG 2009148
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628018450209600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |