Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq162 84.2 3e-11 seq8 84.2 3e-11 >seq162 Length=626193 Score = 84.2 bits (92), Expect = 3e-11 Identities = 233/351 (66%), Gaps = 5/351 (1%) Strand=Plus/Minus Query 111041 AAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTA 111100 ||||| | | | || || | ||||| || || |||||||| || | || || | |||| Sbjct 500215 AAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAAATTA 500156 Query 111101 GACTTTCGCGCAGTCT-CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTT 111159 ||||||| | | |||||| ||| |||| | || || | | ||| || || || Sbjct 500155 GACTTTCTGGTTTCCGGCAACGG-ATAGTAATTGATATCGATTATTTTGTTGAGGTTCTT 500097 Query 111160 GGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATT 111219 || | || ||||| | ||| | ||||| | | ||||| | || ||| | | || Sbjct 500096 TGTTATAAGCTTTGCAACTTCTTTGAGTTTGTGAAAATCATAT-TGTTTATCTGT-CGTT 500039 Query 111220 GACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 ||| || | | || |||||||| ||||||||||| || | || || || Sbjct 500038 -ACAAACATATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAGCCGACGT 499980 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 || || | ||||||||||| ||||| | || || || || | ||||| ||| || Sbjct 499979 ATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATT 499920 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTC 111390 ||| || || || ||||| ||||| |||||||| || || || ||||| Sbjct 499919 ACTTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTC 499869 >seq8 Length=3216730 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 11623 GCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTC 11682 ||| ||||| || || |||||||| |||| ||| || || ||||| ||||| | | | Sbjct 2008957 GCCTACCGCGTCTATTTCATCAATAAAGAGAATGCAAGGAGCATTTTTACGGGCCAATGC 2009016 Query 11683 AAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGC 11742 ||| | |||||| || || | |||||| ||||||||||| || | || | | | Sbjct 2009017 AAACATATCGCGCACTCTCGATGGACCCACGCCAACAAACATTTCTAAGAATTCGGAACC 2009076 Query 11743 AGAG-CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCT 11801 |||| || | ||| ||||| ||||| | ||| || || | || || || ||||| | Sbjct 2009077 AGAGACAGT-GATAAATGGCACATTAGCTTCTCCTGCAGTCGCCTTTGCTAGTAGGGTTT 2009135 Query 11802 TTCCCGTACCTGG 11814 | || |||||||| Sbjct 2009136 TGCCAGTACCTGG 2009148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628018450209600