Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq32 145 9e-30 seq2 141 1e-28 seq116 134 2e-26 >seq32 Length=1919080 Score = 145 bits (160), Expect = 9e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || || || |||||||| || ||||||||||| || | Sbjct 39419 ATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCG 39360 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | || || || ||||||||||| ||||||||||| || |||||| Sbjct 39359 GACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAG 39300 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | ||||| ||||| |||||| | || |||| || || | | || |||||| Sbjct 39299 CAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTATAAT 39240 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||||| |||||||| | ||||| || ||||| | || |||||| Sbjct 39239 ATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGGA 39192 >seq2 Length=5618958 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || ||||| ||||| ||||||||| | || |||||| | Sbjct 3064099 AATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCTTC 3064040 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| |||| | ||||| ||||||||||| || || || ||||||||||| || Sbjct 3064039 CGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGATCA 3063980 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| | || || ||||| |||||| | || |||| || || || | |||||||| Sbjct 3063979 ACAACGTTTGATATTCGCTGGCAAGCAATTGGAAGATGGGCGCACGTTATCCGACTATAA 3063920 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| || || | || | || | ||||| || ||||| Sbjct 3063919 CATACAAAAGGAGTCGACCTTGCACTTGGTACTCCGTCTCCGTGGTGG 3063872 >seq116 Length=862150 Score = 134 bits (148), Expect = 2e-26 Identities = 169/231 (73%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---GTC 27461 ||||||||| ||||| || || | ||||| || || || ||| | || || || ||| Sbjct 484085 AATGCAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTC 484144 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 || | | || | ||| | || || ||||| ||||||||||| || ||||||||||| Sbjct 484145 AG---ACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGA 484201 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 |||||||||| | || |||||||| || || | || |||| || || | | || || Sbjct 484202 CCAGCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTA 484261 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | ||||||||||| |||||||| | || |||||||| ||||| || Sbjct 484262 CAACATACAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGCGGAGG 484312 Score = 127 bits (140), Expect = 2e-24 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 27451 GAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGA 27510 |||||||| ||| |||| || | ||| | || || ||||| ||||||||||| || Sbjct 483903 GAGGTTGAATCATCGGATACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGT 483962 Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 ||||||||||||||||||||| | || |||||||| || || | || |||| || || Sbjct 483963 ATTCCTCCAGACCAGCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACA 484022 Query 27571 CTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGT 27630 | | || || || | |||||||||||||| | ||| | || |||||||| |||||| Sbjct 484023 TTGTCTGATTACAACATACAAAAGGAATCCACATTGCATTTGGTGTTGCGTCTCCGCGGT 484082 Query 27631 GGA 27633 ||| Sbjct 484083 GGA 484085 Score = 123 bits (136), Expect = 3e-23 Identities = 116/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| || || | || ||||| ||||||||| | || ||||| || Sbjct 474104 AATGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCATC 474163 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | |||| | || ||||||||||| || ||||| || ||||| ||||| || Sbjct 474164 GGATACTATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGATCA 474223 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||| ||| | ||||||||||| |||||| Sbjct 474224 GCAACGTTTGATTTTTGCTGGCAAGCAA 474251 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || | ||||| || || || ||| | ||||| || ||| Sbjct 481883 ATGCAAATATTTGTTAAAACTTTGACCGGTAAAACCATCACTTTGGAGGTAGAATCATCA 481942 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | || || ||||| ||||||||||| || ||||||||||||||| Sbjct 481943 GATACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 482002 Query 27526 CAGCGT 27531 |||||| Sbjct 482003 CAGCGT 482008 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570298095553120