Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_028449.1 Length=63569 Score E Sequences producing significant alignments: (Bits) Value seq170 203 1e-47 seq429 111 6e-20 seq985 109 2e-19 >seq170 Length=159274 Score = 203 bits (224), Expect = 1e-47 Identities = 436/647 (67%), Gaps = 6/647 (1%) Strand=Plus/Plus Query 22718 ATGCGGGTGATGTTTGTCTGTCCGTACACCATCCTGCTGAACCAGACAGCGGAACGTTTC 22777 ||||| || ||||||||| || | |||| | ||||| | || |||||| || || Sbjct 158509 ATGCGTGTCATGTTTGTCGCCCCATTCACCGTGCTGCTTGATCAAACAGCGACGCGCTTT 158568 Query 22778 ACCGAATACGGTTTGCCGTGGGAAGAAATCAGTTTTGTATGGCGTGATCACCCTAACTAT 22837 || ||||| ||||| || |||||||| | ||| || ||||| || || || Sbjct 158569 GTTGAGTACGGCTTGCCTGCTGATGAAATCAGCTATGTGTGACGTGACCATCCATTGCAT 158628 Query 22838 GACCCGTCACGACTGATTCAGATTGCCAGTGCCGACACGCTGATCCGTCGTGAGTTTCCT 22897 |||||| |||||| |||||||||||||||||||||||||| ||||| |||| || Sbjct 158629 GACCCGGATAAACTGATCCAGATTGCCAGTGCCGACACGCTGATACGTCGGCAGTTCCCG 158688 Query 22898 GACAACATCGATCTGCTGATCATCGATGAAGCACACATGAAGCGTCGTGCGTTACTTGAG 22957 | ||| || ||| || |||| | || ||||| || ||| || | || || Sbjct 158689 GGCAATATTGATTTGTTGATTGTTGACGAAGCCCATATGCGCCGCAAAAAACTGCTGGAA 158748 Query 22958 GTTATCCGGGACAGAGACATCAGGGTTCTTGGACTTTCCGGCACCCCGTTCGCAGCCTGG 23017 | |||||||| | || |||||||| | || || || || || | ||||||| | ||| Sbjct 158749 ATCATCCGGGATACTGATATCAGGGTGGTGGGGCTATCGGGTACGCTGTTCGCATCATGG 158808 Query 23018 ATGGGGAAGTACTACGAATGCCTGCTCAAGCCTACAACGATTCGTGAACTTATTCAGCGT 23077 ||||| || |||||||| || | || ||||| || || || || || || | | Sbjct 158809 ATGGGAAAATACTACGAGAAGCTCATTAAACCTACCACAATGCGCGAGCTGATAAGACTT 158868 Query 23078 GGTGATCTGAGCGATTACGAGTTTTTTGCCCCCTCAATGCCTGATCTGGCTGGCGTAAA- 23136 || ||| | ||| || ||||| | || || ||| ||| || |||| || Sbjct 158869 GGGGATTTAAGCCCGTATGAGTTCTACGCACCTGATCGGCCCGATGTGAGCAGCGTCAAG 158928 Query 23137 --AACCAGTAACACCGTATTTGGACGGGATTACAACGAGGAGCAGCTCGCATCCATCATG 23194 | ||| | | | | ||| | ||| |||||||||||||| || || ||||||| Sbjct 158929 ACATCCAATCTGGCTGCCTATGGGCAGGACTACAACGAGGAGCAACTGGCTGTCATCATG 158988 Query 23195 GG-GAGTTCGGATCTGGTTGGCGATATCGTTCGCAACTGGCTTGAGAATGGCGAGGATTT 23253 || || | | ||||| || | || || ||||||||||| || || ||||| || Sbjct 158989 GGAGACGCCACGT-TGGTT-GCAACATTGTACGCAACTGGCTGGAAAACGGCGAAGACAG 159046 Query 23254 GCCGACGATCTGCTTCTGCGTGAATGTTGCGCATGCGAATTTTGTTACCCGTGAGTTTTT 23313 || ||| ||||||| ||||| || || ||||| || | ||| || || ||||| | Sbjct 159047 ACCAACGGTCTGCTTTTGCGTCAACGTCAGTCATGCTAACTATGTCACACGACAGTTTAT 159106 Query 23314 ACAGGCCGGTATTGGTGCAGAGGTGATGACGGCAGATACCCTCCATG 23360 | | ||| | ||| || ||||||||||| || |||| |||| Sbjct 159107 AAAATTCGGCGTCAATGCTGAAGTGATGACGGCTGACACCCCACATG 159153 >seq429 Length=112147 Score = 111 bits (122), Expect = 6e-20 Identities = 162/219 (74%), Gaps = 14/219 (6%) Strand=Plus/Minus Query 5312 GTTGTCATTATGACGCCCTCGAGTGGTTTCT--AAACTATCACCACCGTTAGGTTCGAAT 5369 || ||||| ||||| || | ||||| || || |||||||||||| || ||||| Sbjct 107728 GTGGTCATGATGACCTCCA--AATGGTTACTTGAAGTTATCACCACCGTAAGACGCGAAT 107671 Query 5370 C-ATCGGGTGGTGAGACGTACAGGGTTCGAACTACCGG-GAAACCAACCGGCGAGCTTTT 5427 | | |||||| ||| | || | ||||| |||||| | |||||||||| |||| ||| Sbjct 107670 CTAGAGGGTGGCGAGCTGGACGGAGTTCGCG-TACCGGAGTAACCAACCGGTGAGCCTTT 107612 Query 5428 CAGCTCCCCTATACGCCCCACCATAATTCAGATGTGCGCGTGCATACGACAATAAAAAAC 5487 | ||||| | || | |||||||| | |||||| || | | ||||| |||| || Sbjct 107611 CGGCTCCACCATCCAGCCCACCAT---TGAGATGTA-GCTAGATTGCGACATAAAAAGAC 107556 Query 5488 ACGCTCGCGGCGTGTC--TCTGTCGCGGTTTCTATCCGG 5524 |||||||||||||||| |||||||||||| || ||||| Sbjct 107555 ACGCTCGCGGCGTGTCATTCTGTCGCGGTTACT-TCCGG 107518 >seq985 Length=1952 Score = 109 bits (120), Expect = 2e-19 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 27123 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 27182 ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||| Sbjct 1752 GGCCCTTTAGCTCAGTGGTAAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAT 1811 Query 27183 CCAGCAAGGGCCA 27195 ||||||||||||| Sbjct 1812 CCAGCAAGGGCCA 1824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 203291723541580