Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq116 140 2e-28 seq32 87.8 1e-12 >seq116 Length=862150 Score = 140 bits (154), Expect = 2e-28 Identities = 166/220 (75%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||||||||| || ||||| |||||||| ||||| ||||| || | ||| || Sbjct 484303 AGACGCAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGG 484244 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||||| || ||||| || |||||||| ||||| || || | || ||| Sbjct 484243 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCC 484184 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCT-TCGCTCTCCACTTCCACGG 34666 ||||| ||| ||||| ||||||| | || |||||| || | || ||||||| | Sbjct 484183 TTGTCCTGGAT-TTTTGCTTTAACGTTTTCGATAGTGTCTGACGGT-TCTACTTCCAAAG 484126 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | |||||||| ||||| || ||||| ||||| || ||||| Sbjct 484125 TGATCGTTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086 Score = 111 bits (122), Expect = 1e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 ||| || ||||||||||| || || || |||||||| || || || ||||| || | Sbjct 481870 ACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCC 481811 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 | ||| | ||||| || ||||| || ||||| ||||| || || || ||||| || || Sbjct 481810 ATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTT 481751 Query 34611 GTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTA 34669 ||| ||| ||| |||||||| | ||| ||||| ||| || |||| ||| | Sbjct 481750 ATCT-TGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAACCTCCAAGGTGA 481692 Query 34670 TCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | ||||| || || || || ||||| || |||||||| || Sbjct 481691 TAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTT 481652 Score = 105 bits (116), Expect = 4e-18 Identities = 111/145 (77%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||||||||||||| | ||| |||||||| ||||| ||||| || | ||| || Sbjct 484075 AGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGG 484016 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | ||||| | ||||| || ||||| || |||||||| ||||| || || | || ||| Sbjct 484015 CCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCC 483956 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG 34633 ||||| ||| ||||| ||||||| Sbjct 483955 TTGTCCTGGAT-TTTTGCTTTAACG 483932 >seq32 Length=1919080 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| | ||||| ||| | ||| | ||| || |||||||| |||||||| || Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 39252 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | ||| || | ||||| | ||| || || || || || || || || ||||| || || Sbjct 39253 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 39312 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | |||||| ||||| ||||| ||||| | || ||||| | || || Sbjct 39313 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 39372 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | || || || || || |||| ||||| |||||||||||||| ||| Sbjct 39373 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATTG 39423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314722979466158