Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2 188 6e-43 seq32 161 9e-35 seq116 158 1e-33 seq66 109 5e-19 seq36 98.7 9e-16 >seq2 Length=5618958 Score = 188 bits (208), Expect = 6e-43 Identities = 183/233 (79%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| || ||||| |||||||| | ||||| || || ||| Sbjct 3064098 ATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCTTCC 3064039 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| |||||||| || ||||||||||| || || |||||| Sbjct 3064038 GACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGATCAA 3063979 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 || ||||| |||| ||| ||||| ||||||||||| | || |||| ||||| || || Sbjct 3063978 CAACGTTTGATATTCGCTGGCAAGCAATTGGAAGATGGG-CGCACGTTATCCGACTATAA 3063920 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAA 27219 ||| ||||||||||||||||| || ||||| | ||| | || |||||||||| Sbjct 3063919 CATACAAAAGGAGTCGACCTTGCACTTGGTACTCCGTCTCCGTGGTGGCATAA 3063867 >seq32 Length=1919080 Score = 161 bits (178), Expect = 9e-35 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||||||||| || || |||||| | || |||||||| || ||||| || Sbjct 39419 ATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCG 39360 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| || ||||| |||||||| || || |||||||| || Sbjct 39359 GACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAG 39300 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || || || || | ||| || || ||||||||||| | || | |||||||| || Sbjct 39299 CAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTATAAT 39240 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||| || || ||||||||| | || |||||||||| ||||| Sbjct 39239 ATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGG 39193 >seq116 Length=862150 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| || || |||| || | || || || || ||| Sbjct 481655 ATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGCCATCC 481714 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| ||||||||||| |||||||| | ||||| |||||| Sbjct 481715 GACACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCAGATCAA 481774 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||||| || | || |||||||| |||||| | | || | ||||| |||||| Sbjct 481775 CAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGACTACAAC 481834 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || ||||| | ||||||||||| |||||||| |||||||| Sbjct 481835 ATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGCAT 481884 Score = 149 bits (164), Expect = 5e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| |||||||| |||||| ||||||| || | || ||| | ||||| |||||||| Sbjct 484086 ATGCAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTCA 484145 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || ||| |||||| || ||||| ||||| || || || || || Sbjct 484146 GACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAG 484205 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | || |||||||| |||||||| | || | || ||||||||| Sbjct 484206 CAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAAC 484265 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| || || | || ||||| |||||| | || || || Sbjct 484266 ATACAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGCGGAGG 484312 Score = 109 bits (120), Expect = 5e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27063 GTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATAC 27122 || ||| |||||| || ||||| ||||| || || || || || |||||||| || | Sbjct 483933 GTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAGCAGCGTTTGATCTTT 483992 Query 27123 GCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCG 27182 || |||||||| |||||||| | || | || ||||||||||| |||||||| || Sbjct 483993 GCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAACATACAAAAGGAATCC 484052 Query 27183 ACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| |||||| | || ||||| || Sbjct 484053 ACATTGCATTTGGTGTTGCGTCTCCGCGGTGGAAT 484087 Score = 98.7 bits (108), Expect = 9e-16 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||||||||| | || ||||| |||||||| | ||||| ||||| || Sbjct 474105 ATGCAAATCTTTGTAAAAACATTAACTGGCAAAACTATTACTTTGGAAGTTGAACCATCG 474164 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || ||| ||||||||||| || ||||| || || || ||||| Sbjct 474165 GATACTATCGAAAATGTTAAAGCTAAAATTCAAGATAAGGAAGGTATTCCCCCAGATCAG 474224 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATT 27136 || ||||| || | || ||||| ||||| Sbjct 474225 CAACGTTTGATTTTTGCTGGCAAGCAATT 474253 >seq66 Length=1297373 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| | || ||| | | | ||| | || | |||||| || Sbjct 241342 ATGCAGATTTTCGTGAAAACGTTAACGGGCCATACCCTCACTTTAGATGCCGAACCGACC 241401 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | | | ||| || ||||| || || || ||||| ||||| |||| Sbjct 241402 GATACTATTGAAACGATTAAAACCAAGATTCAGGATAAGGACGGCATCCCACCAAATCAG 241461 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | ||||| || || |||||||| || ||||||| ||| || | || || ||| Sbjct 241462 CGCCGTTTGATTTATGCCGGCAAGCAGCTGGAAGATGGTTGCACGTTAATGGACTATAAC 241521 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || ||||||| ||||| | ||||||||||||||||| | ||||| || Sbjct 241522 ATACAAAAGGGTTCGACTCTCCATTTGGTTTTGCGTTTACTTGGTGGTAT 241571 >seq36 Length=1779304 Score = 98.7 bits (108), Expect = 9e-16 Identities = 231/344 (67%), Gaps = 10/344 (3%) Strand=Plus/Minus Query 135314 CGCGAATTGGCGGACAATTTTTGTTATTATAACAAACATTATGATTGCATAGAAGGTGCT 135373 || ||||||||||||||||| |||| ||||||| || |||||||| | |||||| Sbjct 1521979 CGGGAATTGGCGGACAATTTCTGTTTTTATAACCAAAATTATGATAATTTTGAAGGTTTA 1521920 Query 135374 CCGGCATGGGCGCAACAAACTTTGCACGCTCACGCCTCTGATCGCAGA--GACTT--TTG 135429 | | ||| ||| ||||| | ||| || || | | || || | ||| Sbjct 1521919 CAAGATTGGTCGCGTAAAACTCTAAACGAACA----TCGTAAAGACGAACGATCTCCTTG 1521864 Query 135430 TTACACGCGCGAGCAATGGGACCAAGCGTTGACGCATGACCCGTTGTGGAACGCGGCACA 135489 || | ||| ||| || || || || ||||| || ||||| | || || Sbjct 1521863 CTATAGCTTAGAGGAATTCGAGCAGGCTCGTACCCATGATGATTTATGGAATTCAGCCCA 1521804 Query 135490 ACGGCAGCTTAAGCGAGAAGGCAAAATGCACGGATTTATGCGCATGTATTGGGCAAAAAA 135549 || ||| | | || ||| || ||||||||||| ||| |||| ||||||||||| ||||| Sbjct 1521803 ACTGCAATTGATGCAAGAGGGTAAAATGCACGGCTTTTTGCGTATGTATTGGGCTAAAAA 1521744 Query 135550 GATATTGGAATGGTCTGCATCGCCTGCAGAGGCGCTACAACACGCAATATTTTTTAATGA 135609 ||| || ||||||||| | |||| ||| || | || | || || | ||||| Sbjct 1521743 GATTTTAGAATGGTCTAAAAGCCCTGAAGACGCTTTGGAAATTTCGCTACTTCTAAATGA 1521684 Query 135610 TTACTACAGTTTAGATGG-ACGCGATTCAAATGGCTACGTAGGT 135652 | |||||||| ||||| ||| ||| | ||||| || || ||| Sbjct 1521683 TAGATACAGTTTGGATGGCACG-GATCCCAATGGTTATGTCGGT 1521641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434909016635520