Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_028656.1
Length=65955
Score E
Sequences producing significant alignments: (Bits) Value
seq170 203 1e-47
seq429 111 7e-20
seq985 109 2e-19
>seq170
Length=159274
Score = 203 bits (224), Expect = 1e-47
Identities = 436/647 (67%), Gaps = 6/647 (1%)
Strand=Plus/Plus
Query 22775 ATGCGGGTGATGTTTGTCTGTCCGTACACCATCCTGCTGAACCAGACAGCGGAACGTTTC 22834
||||| || ||||||||| || | |||| | ||||| | || |||||| || ||
Sbjct 158509 ATGCGTGTCATGTTTGTCGCCCCATTCACCGTGCTGCTTGATCAAACAGCGACGCGCTTT 158568
Query 22835 ACCGAATACGGTTTGCCGTGGGAAGAAATCAGTTTTGTATGGCGTGATCACCCTAACTAT 22894
|| ||||| ||||| || |||||||| | ||| || ||||| || || ||
Sbjct 158569 GTTGAGTACGGCTTGCCTGCTGATGAAATCAGCTATGTGTGACGTGACCATCCATTGCAT 158628
Query 22895 GACCCGTCACGACTGATTCAGATTGCCAGTGCCGACACGCTGATCCGTCGTGAGTTTCCT 22954
|||||| |||||| |||||||||||||||||||||||||| ||||| |||| ||
Sbjct 158629 GACCCGGATAAACTGATCCAGATTGCCAGTGCCGACACGCTGATACGTCGGCAGTTCCCG 158688
Query 22955 GACAACATCGATCTGCTGATCATCGATGAAGCACACATGAAGCGTCGTGCGTTACTTGAG 23014
| ||| || ||| || |||| | || ||||| || ||| || | || ||
Sbjct 158689 GGCAATATTGATTTGTTGATTGTTGACGAAGCCCATATGCGCCGCAAAAAACTGCTGGAA 158748
Query 23015 GTTATCCGGGACAGAGACATCAGGGTTCTTGGACTTTCCGGCACCCCGTTCGCAGCCTGG 23074
| |||||||| | || |||||||| | || || || || || | ||||||| | |||
Sbjct 158749 ATCATCCGGGATACTGATATCAGGGTGGTGGGGCTATCGGGTACGCTGTTCGCATCATGG 158808
Query 23075 ATGGGGAAGTACTACGAATGCCTGCTCAAGCCTACAACGATTCGTGAACTTATTCAGCGT 23134
||||| || |||||||| || | || ||||| || || || || || || | |
Sbjct 158809 ATGGGAAAATACTACGAGAAGCTCATTAAACCTACCACAATGCGCGAGCTGATAAGACTT 158868
Query 23135 GGTGATCTGAGCGATTACGAGTTTTTTGCCCCCTCAATGCCTGATCTGGCTGGCGTAAA- 23193
|| ||| | ||| || ||||| | || || ||| ||| || |||| ||
Sbjct 158869 GGGGATTTAAGCCCGTATGAGTTCTACGCACCTGATCGGCCCGATGTGAGCAGCGTCAAG 158928
Query 23194 --AACCAGTAACACCGTATTTGGACGGGATTACAACGAGGAGCAGCTCGCATCCATCATG 23251
| ||| | | | | ||| | ||| |||||||||||||| || || |||||||
Sbjct 158929 ACATCCAATCTGGCTGCCTATGGGCAGGACTACAACGAGGAGCAACTGGCTGTCATCATG 158988
Query 23252 GG-GAGTTCGGATCTGGTTGGCGATATCGTTCGCAACTGGCTTGAGAATGGCGAGGATTT 23310
|| || | | ||||| || | || || ||||||||||| || || ||||| ||
Sbjct 158989 GGAGACGCCACGT-TGGTT-GCAACATTGTACGCAACTGGCTGGAAAACGGCGAAGACAG 159046
Query 23311 GCCGACGATCTGCTTCTGCGTGAATGTTGCGCATGCGAATTTTGTTACCCGTGAGTTTTT 23370
|| ||| ||||||| ||||| || || ||||| || | ||| || || ||||| |
Sbjct 159047 ACCAACGGTCTGCTTTTGCGTCAACGTCAGTCATGCTAACTATGTCACACGACAGTTTAT 159106
Query 23371 ACAGGCCGGTATTGGTGCAGAGGTGATGACGGCAGATACCCTCCATG 23417
| | ||| | ||| || ||||||||||| || |||| ||||
Sbjct 159107 AAAATTCGGCGTCAATGCTGAAGTGATGACGGCTGACACCCCACATG 159153
>seq429
Length=112147
Score = 111 bits (122), Expect = 7e-20
Identities = 162/219 (74%), Gaps = 14/219 (6%)
Strand=Plus/Minus
Query 5369 GTTGTCATTATGACGCCCTCGAGTGGTTTCT--AAACTATCACCACCGTTAGGTTCGAAT 5426
|| ||||| ||||| || | ||||| || || |||||||||||| || |||||
Sbjct 107728 GTGGTCATGATGACCTCCA--AATGGTTACTTGAAGTTATCACCACCGTAAGACGCGAAT 107671
Query 5427 C-ATCGGGTGGTGAGACGTACAGGGTTCGAACTACCGG-GAAACCAACCGGCGAGCTTTT 5484
| | |||||| ||| | || | ||||| |||||| | |||||||||| |||| |||
Sbjct 107670 CTAGAGGGTGGCGAGCTGGACGGAGTTCGCG-TACCGGAGTAACCAACCGGTGAGCCTTT 107612
Query 5485 CAGCTCCCCTATACGCCCCACCATAATTCAGATGTGCGCGTGCATACGACAATAAAAAAC 5544
| ||||| | || | |||||||| | |||||| || | | ||||| |||| ||
Sbjct 107611 CGGCTCCACCATCCAGCCCACCAT---TGAGATGTA-GCTAGATTGCGACATAAAAAGAC 107556
Query 5545 ACGCTCGCGGCGTGTC--TCTGTCGCGGTTTCTATCCGG 5581
|||||||||||||||| |||||||||||| || |||||
Sbjct 107555 ACGCTCGCGGCGTGTCATTCTGTCGCGGTTACT-TCCGG 107518
>seq985
Length=1952
Score = 109 bits (120), Expect = 2e-19
Identities = 68/73 (93%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 27183 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 27242
||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||
Sbjct 1752 GGCCCTTTAGCTCAGTGGTAAGAGCAGGCGACTCATAATCGCTTGGTCGCTGGTTCAAAT 1811
Query 27243 CCAGCAAGGGCCA 27255
|||||||||||||
Sbjct 1812 CCAGCAAGGGCCA 1824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 210926762930376
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |