Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_028660.1 Length=61035 Score E Sequences producing significant alignments: (Bits) Value seq170 230 9e-56 seq985 109 2e-19 >seq170 Length=159274 Score = 230 bits (254), Expect = 9e-56 Identities = 442/647 (68%), Gaps = 6/647 (1%) Strand=Plus/Minus Query 14063 CATGGGGGGTATCTGCCGTCATCACCTCTGCGCCAATGCCAGACTGTAAAAACTCACGGG 14122 |||| ||||| || ||||||||||| || || | ||| | | || ||||| || | Sbjct 159153 CATGTGGGGTGTCAGCCGTCATCACTTCAGCATTGACGCCGAATTTTATAAACTGTCGTG 159094 Query 14123 TAACAAAGTTCGCATGAGCCACATTCACGCAGAAGCAGATCGTCGGTAAATCCTCGCCAT 14182 | ||| |||| |||||| || || ||||| ||||||| ||| ||| || ||||| | Sbjct 159093 TGACATAGTTAGCATGACTGACGTTGACGCAAAAGCAGACCGTTGGTCTGTCTTCGCCGT 159034 Query 14183 TCTCAAGCCAGTTGCTGACGATATCGCCAACCAGATCCGAACTC-CCCATGATGGATGCG 14241 | || |||||||||| || || | || ||||| | | || ||||||||| || Sbjct 159033 TTTCCAGCCAGTTGCGTACAATGTTGC-AACCA-ACGTGGCGTCTCCCATGATGACAGCC 158976 Query 14242 AGCTGTTCCTCGTTGTAATCCCGTCCAAATACGGTGTTACTGGTT---TTTACGCCAGCC 14298 || || ||||||||||| ||| | ||| | | | | ||| | || |||| | Sbjct 158975 AGTTGCTCCTCGTTGTAGTCCTGCCCATAGGCAGCCAGATTGGATGTCTTGACGCTGCTC 158916 Query 14299 AGATCAGGCATTGAGGGGGCAAAAAACTCATAATCGCTCAGATCACCACGCTGAATAAGT 14358 | ||| ||| || || | |||||||| ||| | ||| ||| | || || Sbjct 158915 ACATCGGGCCGATCAGGTGCGTAGAACTCATACGGGCTTAAATCCCCAAGTCTTATCAGC 158856 Query 14359 TCACGAATCGTTGTAGGCTTGATCAGGCATTCGTAGTACTTCCCCATCCAGGCTGCGAAC 14418 || || || || ||||| || || || |||||||| || |||||||| | ||||||| Sbjct 158855 TCGCGCATTGTGGTAGGTTTAATGAGCTTCTCGTAGTATTTTCCCATCCATGATGCGAAC 158796 Query 14419 GGGGTGCCGGAAAGCCCAAGAACCCTGATATCTTTGTCCCGGATAACCTCAAGTAACGCA 14478 | || || || ||||| | ||||||||||| | |||||||| | || || | Sbjct 158795 AGCGTACCCGATAGCCCCACCACCCTGATATCAGTATCCCGGATGATTTCCAGCAGTTTT 158736 Query 14479 CGACGCTTCATGTGTGCTTCATCGATGATCAGCAGATCGATGTTGTCAGGAAACTCACGA 14538 || ||| || ||||| || | |||| || ||| || ||| | || |||| ||| Sbjct 158735 TTGCGGCGCATATGGGCTTCGTCAACAATCAACAAATCAATATTGCCCGGGAACTGCCGA 158676 Query 14539 CGGATCAGCGTGTCGGCACTGGCAATCTGAATCAGTCGTGACGGGTCATAGTTAGGGTGA 14598 || |||||||||||||||||||||||||| |||||| |||||||| || || Sbjct 158675 CGTATCAGCGTGTCGGCACTGGCAATCTGGATCAGTTTATCCGGGTCATGCAATGGATGG 158616 Query 14599 TCACGCCATACAAAACTGATTTCTTCCCACGGCAAACCGTATTCGGTGAAACGTTCCGCT 14658 ||||| || ||| | |||||||| || ||||| ||||| || || || |||| Sbjct 158615 TCACGTCACACATAGCTGATTTCATCAGCAGGCAAGCCGTACTCAACAAAGCGCGTCGCT 158556 Query 14659 GTCTGGTTCAGCAGGATGGTGTACGGACAGACAAACATCACCCGCAT 14705 || || | ||||| | |||| | || ||||||||| || ||||| Sbjct 158555 GTTTGATCAAGCAGCACGGTGAATGGGGCGACAAACATGACACGCAT 158509 >seq985 Length=1952 Score = 109 bits (120), Expect = 2e-19 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 10216 TGGCCCTTGCTGGATTTGAACCAGCGACCTGGCGATTATGAGTCGCTCGCTCTCACCACT 10275 ||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||| Sbjct 1824 TGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTTACCACT 1765 Query 10276 GAGCTAAAGGGCC 10288 ||||||||||||| Sbjct 1764 GAGCTAAAGGGCC 1752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195186399328764