Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_028685.1 Length=62851 Score E Sequences producing significant alignments: (Bits) Value seq170 208 3e-49 >seq170 Length=159274 Score = 208 bits (230), Expect = 3e-49 Identities = 437/647 (68%), Gaps = 6/647 (1%) Strand=Plus/Plus Query 21056 ATGCGGGTGATGTTTGTCTGTCCGTACACCATCCTGCTGAACCAGACAGCGGAACGTTTC 21115 ||||| || ||||||||| || | |||| | ||||| | || |||||| || || Sbjct 158509 ATGCGTGTCATGTTTGTCGCCCCATTCACCGTGCTGCTTGATCAAACAGCGACGCGCTTT 158568 Query 21116 ACCGAATACGGTTTGCCGTGGGAAGAAATCAGTTTTGTATGGCGTGATCACCCTAACTAT 21175 || ||||| ||||| || |||||||| | ||| || ||||| || || || Sbjct 158569 GTTGAGTACGGCTTGCCTGCTGATGAAATCAGCTATGTGTGACGTGACCATCCATTGCAT 158628 Query 21176 GACCCGTCACGACTGATTCAGATTGCCAGTGCCGACACGCTGATCCGTCGTGAGTTTCCT 21235 |||||| |||||| |||||||||||||||||||||||||| ||||| |||| || Sbjct 158629 GACCCGGATAAACTGATCCAGATTGCCAGTGCCGACACGCTGATACGTCGGCAGTTCCCG 158688 Query 21236 GACAACATCGATCTGCTGATCATCGATGAAGCACACATGAAGCGTCGTGCGTTACTTGAG 21295 | ||| || ||| || |||| | || ||||| || ||| || | || || Sbjct 158689 GGCAATATTGATTTGTTGATTGTTGACGAAGCCCATATGCGCCGCAAAAAACTGCTGGAA 158748 Query 21296 GTTATCCGGGACAGAGACATCAGGGTTCTTGGACTTTCCGGCACCCCGTTCGCAGCCTGG 21355 | |||||||| | || |||||||| | || || || || || | ||||||| | ||| Sbjct 158749 ATCATCCGGGATACTGATATCAGGGTGGTGGGGCTATCGGGTACGCTGTTCGCATCATGG 158808 Query 21356 ATGGGGAAGTACTACGAATGCCTGATCAAGCCTACAACGATTCGTGAACTTATTCAGCGT 21415 ||||| || |||||||| || || || ||||| || || || || || || | | Sbjct 158809 ATGGGAAAATACTACGAGAAGCTCATTAAACCTACCACAATGCGCGAGCTGATAAGACTT 158868 Query 21416 GGTGATCTGAGCGATTACGAGTTTTTTGCCCCCTCAATGCCTGATCTGGCTGGCGTAAA- 21474 || ||| | ||| || ||||| | || || ||| ||| || |||| || Sbjct 158869 GGGGATTTAAGCCCGTATGAGTTCTACGCACCTGATCGGCCCGATGTGAGCAGCGTCAAG 158928 Query 21475 --AACCAGTAACACCGTATTTGGACGGGATTACAACGAGGAGCAGCTCGCATCCATCATG 21532 | ||| | | | | ||| | ||| |||||||||||||| || || ||||||| Sbjct 158929 ACATCCAATCTGGCTGCCTATGGGCAGGACTACAACGAGGAGCAACTGGCTGTCATCATG 158988 Query 21533 GG-GAGTTCGGATCTGGTTGGCGATATCGTTCGCAACTGGCTTGAGAATGGCGAGGATTT 21591 || || | | ||||| || | || || ||||||||||| || || ||||| || Sbjct 158989 GGAGACGCCACGT-TGGTT-GCAACATTGTACGCAACTGGCTGGAAAACGGCGAAGACAG 159046 Query 21592 GCCGACGATCTGCTTTTGCGTGAATGTTGCGCATGCGAATTTTGTTACCCGTGAGTTTTT 21651 || ||| ||||||||||||| || || ||||| || | ||| || || ||||| | Sbjct 159047 ACCAACGGTCTGCTTTTGCGTCAACGTCAGTCATGCTAACTATGTCACACGACAGTTTAT 159106 Query 21652 ACAGGCCGGTATTGGCGCAGAGGTGATGACGGCAGATACCCTCCATG 21698 | | ||| | || || ||||||||||| || |||| |||| Sbjct 159107 AAAATTCGGCGTCAATGCTGAAGTGATGACGGCTGACACCCCACATG 159153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200994171873032