Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq367 143 5e-30 >seq367 Length=84945 Score = 143 bits (158), Expect = 5e-30 Identities = 287/418 (69%), Gaps = 12/418 (3%) Strand=Plus/Plus Query 21862 ATTGGCTATGTACGCGTGTCAACAAATGACCAGAACACGGAATTGCAGCGTAACGCGCTG 21921 || |||||| | | ||||||| |||||| || ||||| || || ||||| || | || Sbjct 11719 ATAGGCTATATGAGGGTGTCAAAAAATGAACAAAACACCGATTTACAGCGAAAATCACTT 11778 Query 21922 GAGTGCGCAGGATGTGAGCTGATTTTTGAGGATAAAATCAGCGGCACTA-AG-TCCGACC 21979 || || ||||||| |||||||||||||||||||||||| | | || || || Sbjct 11779 ATTTGTACAAATTGTGAGCAGATTTTTGAGGATAAAATCAGCGGAAAAACAGATCAGA-- 11836 Query 21980 GACCGGGACTGAAAAAACTGCTCAGGACATT---ATCGGAGGGGGATACACTGGTGGTCT 22036 |||| || | ||| ||| | || | ||||| | || || | | |||| Sbjct 11837 GACCCAGATTAAAACGCGCGCTAAATGCACTGAAATCGG---GTGACACCTTAATCGTCT 11893 Query 22037 GGAAGCTGGACAGGCTGGGGCGTAATATGCGGCATCTGGTCATTCTGGTTGAGGAACTGC 22096 |||||||||| || ||||| || | || ||| || | | | | | ||||| Sbjct 11894 GGAAGCTGGATAGACTGGGTCGCAGCATTAAACATTTGATTACTTTAATATCCAAACTGG 11953 Query 22097 GCGAACGCGGCGTTAATTTTCGCAGCCTGACGGATGCTATTGATACCAGCACG-CCGATG 22155 || || || |||||| || |||||||||| ||||||||| ||| ||| || Sbjct 11954 AAGATGAAGGTATTCATTTTCATAGTTTGACGGATGCCATTGATACCTCTACGTCCGCTG 12013 Query 22156 GGGCGTTTTTTCTTTCATGTGATGGGTGCCCTGGCTGAAATGGAACGAGAACTCATTGTC 22215 | ||||||||||||||||||||| |||| |||| ||||||| || ||||||||||| Sbjct 12014 GC-CGTTTTTTCTTTCATGTGATGAGTGCGTTGGCGCAAATGGAGCGGGAACTCATTGTT 12072 Query 22216 GAGCGGACTCGGGCCGGGCTGGAAGCGGCCAGAGCCAAAGGTCGTATTGGTGGCAGAC 22273 ||||| ||| ||| || | | || || ||| || || ||||| || || |||| Sbjct 12073 GAGCGTACTAAGGCAGGTTTAGCCGCAGCAAGAAGCAGGGGACGTATCGGGGGTAGAC 12130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93434884895988