Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq2 109 4e-19
seq32 104 2e-17
seq116 98.7 7e-16
>seq2
Length=5618958
Score = 109 bits (120), Expect = 4e-19
Identities = 168/240 (70%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 27778 CACAATAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGAT 27837
|| |||| |||||||||||||| || |||||||||||||| ||| |||||| | ||
Sbjct 3064110 CAGAATATAAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAA 3064051
Query 27838 GTCGAAAGCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTT 27897
|| || ||||| | | || ||||| ||||| || |||||||| ||
Sbjct 3064050 GTTGAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATT 3063991
Query 27898 CCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTG 27957
|| || || ||||| || || || || || || |||||||| || | |||| ||
Sbjct 3063990 CCTCCAGATCAACAACGTTTGATATTCGCTGGCAAGCAATTGGAAGATGGGCGCACGTTA 3063931
Query 27958 TCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017
||||| || ||||| ||||| ||| || ||||| ||||| | ||| | ||||| |||
Sbjct 3063930 TCCGACTATAACATACAAAAGGAGTCGACCTTGCACTTGGTACTCCGTCTCCGTGGTGGC 3063871
>seq32
Length=1919080
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|| ||||| |||||||| ||||| || || || || || || |||| |||||| |
Sbjct 39422 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 39363
Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906
| ||| | | || || ||| || || |||||||| || |||| ||
Sbjct 39362 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 39303
Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966
|||||||| || ||||| || ||||| |||||||| || | |||| |||||||||||
Sbjct 39302 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTAT 39243
Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|| || |||||||| ||| || ||| | || |||||||||| || ||
Sbjct 39242 AATATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGG 39193
>seq116
Length=862150
Score = 98.7 bits (108), Expect = 7e-16
Identities = 113/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924
|| ||| |||||| ||||| |||||| |||| || ||||| || || || |||
Sbjct 483933 GTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAGCAGCGTTTGATCTTT 483992
Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984
|| || ||||| ||||| || | |||| ||||| ||||||||||| ||||| || |
Sbjct 483993 GCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAACATACAAAAGGAATCC 484052
Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
|| ||||||||||| |||||| | || || ||
Sbjct 484053 ACATTGCATTTGGTGTTGCGTCTCCGCGGTGG 484084
Score = 96.9 bits (106), Expect = 2e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848
||||||||| ||||| |||||| | || || ||| || || | || || ||| |
Sbjct 484085 AATGCAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTC 484144
Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908
||| | | || || ||| |||||| ||||| |||||| |||| || ||
Sbjct 484145 AGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 484204
Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968
||| || || || ||||| || ||||| ||||| || | |||| ||||| ||||||||
Sbjct 484205 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAA 484264
Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||| ||||| || ||| | || ||||| |||||| | || || ||
Sbjct 484265 CATACAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGCGGAGG 484312
Score = 93.3 bits (102), Expect = 3e-14
Identities = 162/234 (69%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845
||||||||| || || ||||| || | ||||||||| ||| || | || || ||
Sbjct 481651 TAAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGCC 481710
Query 27846 CACCGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903
||||| | | | ||| || ||| ||||| || |||||||| || ||
Sbjct 481711 ATCCGACACTATTGAGAAT--GTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCA 481768
Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963
|| || ||||| || || ||||| || ||||| ||||| | | |||| | |||||
Sbjct 481769 GATCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGAC 481828
Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017
|||||||| || ||||| || | ||||||||||| ||||||||||| |||
Sbjct 481829 TACAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGC 481882
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355854914212002
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |