Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq2 109 4e-19 seq32 104 2e-17 seq116 98.7 7e-16 >seq2 Length=5618958 Score = 109 bits (120), Expect = 4e-19 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 27778 CACAATAGTAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGAT 27837 || |||| |||||||||||||| || |||||||||||||| ||| |||||| | || Sbjct 3064110 CAGAATATAAAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAA 3064051 Query 27838 GTCGAAAGCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTT 27897 || || ||||| | | || ||||| ||||| || |||||||| || Sbjct 3064050 GTTGAGCCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATT 3063991 Query 27898 CCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTG 27957 || || || ||||| || || || || || || |||||||| || | |||| || Sbjct 3063990 CCTCCAGATCAACAACGTTTGATATTCGCTGGCAAGCAATTGGAAGATGGGCGCACGTTA 3063931 Query 27958 TCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||| || ||||| ||||| ||| || ||||| ||||| | ||| | ||||| ||| Sbjct 3063930 TCCGACTATAACATACAAAAGGAGTCGACCTTGCACTTGGTACTCCGTCTCCGTGGTGGC 3063871 >seq32 Length=1919080 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| |||||||| ||||| || || || || || || |||| |||||| | Sbjct 39422 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 39363 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||| | | || || ||| || || |||||||| || |||| || Sbjct 39362 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 39303 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||||| || ||||| || ||||| |||||||| || | |||| ||||||||||| Sbjct 39302 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTAT 39243 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || || |||||||| ||| || ||| | || |||||||||| || || Sbjct 39242 AATATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGG 39193 >seq116 Length=862150 Score = 98.7 bits (108), Expect = 7e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 27865 GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTT 27924 || ||| |||||| ||||| |||||| |||| || ||||| || || || ||| Sbjct 483933 GTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAGCAGCGTTTGATCTTT 483992 Query 27925 GCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGC 27984 || || ||||| ||||| || | |||| ||||| ||||||||||| ||||| || | Sbjct 483993 GCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAACATACAAAAGGAATCC 484052 Query 27985 ACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||||||||||| |||||| | || || || Sbjct 484053 ACATTGCATTTGGTGTTGCGTCTCCGCGGTGG 484084 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| |||||| | || || ||| || || | || || ||| | Sbjct 484085 AATGCAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTC 484144 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 ||| | | || || ||| |||||| ||||| |||||| |||| || || Sbjct 484145 AGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 484204 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||| || || || ||||| || ||||| ||||| || | |||| ||||| |||||||| Sbjct 484205 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAA 484264 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| ||||| || ||| | || ||||| |||||| | || || || Sbjct 484265 CATACAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTCCGCGGAGG 484312 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/234 (69%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845 ||||||||| || || ||||| || | ||||||||| ||| || | || || || Sbjct 481651 TAAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGCC 481710 Query 27846 CACCGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 ||||| | | | ||| || ||| ||||| || |||||||| || || Sbjct 481711 ATCCGACACTATTGAGAAT--GTTAAAACTAAAATTCAAGATAAAGAAGGAGTCCCACCA 481768 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||||| || || ||||| || ||||| ||||| | | |||| | ||||| Sbjct 481769 GATCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGAC 481828 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 |||||||| || ||||| || | ||||||||||| ||||||||||| ||| Sbjct 481829 TACAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGC 481882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355854914212002