Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq116 156 3e-33
seq2 152 3e-32
seq32 138 8e-28
seq66 104 2e-17
>seq116
Length=862150
Score = 156 bits (172), Expect = 3e-33
Identities = 176/233 (76%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 23606 TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT 23665
||||||||||||| ||||| || || | || || ||||| ||||| | || |||||
Sbjct 481650 TTAAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGC 481709
Query 23666 CCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724
| | |||||| |||| ||| ||||||| |||||| || |||||||| || || |||
Sbjct 481710 CATCCGACACTATTGAGAATGTTAAAAC-TAAAATTCAAGATAAAGAAGGAGTCCCACCA 481768
Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784
|||||||| ||||| || ||||| |||||||| ||||| | | ||||| | |||
Sbjct 481769 GATCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGAC 481828
Query 23785 TACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837
|||||||| || ||||| || ||| | ||||| |||||| | ||||| || ||
Sbjct 481829 TACAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGG 481881
Score = 136 bits (150), Expect = 3e-27
Identities = 149/198 (75%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || || |||||||| | || ||||||||||||||| | ||||| || | |
Sbjct 484085 AATGCAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTC 484144
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|||||| | |||| | ||| |||||| ||||| |||||| | || ||||| ||
Sbjct 484145 AGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 484204
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||||| || ||||| |||||||| ||||||| | ||||| || ||||||||
Sbjct 484205 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAA 484264
Query 23790 CATACAAAAAGAGTCCAC 23807
||||||||| || || ||
Sbjct 484265 CATACAAAAGGAATCTAC 484282
Score = 116 bits (128), Expect = 3e-21
Identities = 126/167 (75%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 23656 GAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGT 23715
|| ||||| || |||| ||| | |||| | ||| |||||| ||||| ||||||
Sbjct 483903 GAGGTTGAATCATCGGATACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGT 483962
Query 23716 GTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACT 23775
| || ||||| || |||||||| || ||||| |||||||| ||||||| | |||||
Sbjct 483963 ATTCCTCCAGACCAGCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACA 484022
Query 23776 TTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822
|| ||||||||||||||||| || |||||||| ||||| || ||
Sbjct 484023 TTGTCTGATTACAACATACAAAAGGAATCCACATTGCATTTGGTGTT 484069
>seq2
Length=5618958
Score = 152 bits (168), Expect = 3e-32
Identities = 161/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|||||||| |||||||||||||| || || || ||||| || ||| | |||||||| |
Sbjct 3064101 AAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCT 3064042
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| |||||| |||||| | || |||||| || |||||||| | || ||||||
Sbjct 3064041 TCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGAT 3063982
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
||||| ||||| ||||| || ||||| ||| ||||||| | ||||| ||| ||| ||
Sbjct 3063981 CAACAACGTTTGATATTCGCTGGCAAGCAATTGGAAGATGGGCGCACGTTATCCGACTAT 3063922
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819
||||||||||| ||||| || || || || ||
Sbjct 3063921 AACATACAAAAGGAGTCGACCTTGCACTTGGT 3063890
>seq32
Length=1919080
Score = 138 bits (152), Expect = 8e-28
Identities = 171/234 (73%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| ||||||||||| || |||||||| ||||| || || |||||||| || || || ||
Sbjct 39422 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 39363
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
|||||||| | |||| ||||| || ||| |||||||| || | || || ||
Sbjct 39362 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 39303
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| || || || || || || || || ||| ||||||| | ||||| || ||||||
Sbjct 39302 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTAT 39243
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCA 23841
|| || |||||||| ||||| |||||| | || | | |||||||| ||| ||
Sbjct 39242 AATATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGGAGCA 39189
>seq66
Length=1297373
Score = 104 bits (114), Expect = 2e-17
Identities = 154/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
||||||||||||||||| ||||| | ||||| | || ||||| | || | || |
Sbjct 241339 AAAATGCAGATTTTCGTGAAAACGTTAACGGGCCATACCCTCACTTTAGATGCCGAACCG 241398
Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
|| || ||| |||||| |||||||| || ||| || || || || | || ||| |
Sbjct 241399 ACCGATACTATTGAAACGATTAAAAC-CAAGATTCAGGATAAGGACGGCATCCCACCAAA 241457
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||| | ||||| || | ||||||||| || |||||||| | |||| ||| || ||
Sbjct 241458 TCAGCGCCGTTTGATTTATGCCGGCAAGCAGCTGGAAGATGGTTGCACGTTAATGGACTA 241517
Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822
||||||||||| | || || | ||||| |||||
Sbjct 241518 TAACATACAAAAGGGTTCGACTCTCCATTTGGTTTT 241553
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 338002489756808
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |