Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq116 156 3e-33 seq2 152 3e-32 seq32 138 8e-28 seq66 104 2e-17 >seq116 Length=862150 Score = 156 bits (172), Expect = 3e-33 Identities = 176/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 23606 TTAAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACT 23665 ||||||||||||| ||||| || || | || || ||||| ||||| | || ||||| Sbjct 481650 TTAAAATGCAGATCTTCGTGAAGACATTGACTGGGAAAACTATCACCTTGGAGGTTGAGC 481709 Query 23666 CCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCA 23724 | | |||||| |||| ||| ||||||| |||||| || |||||||| || || ||| Sbjct 481710 CATCCGACACTATTGAGAATGTTAAAAC-TAAAATTCAAGATAAAGAAGGAGTCCCACCA 481768 Query 23725 GATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGAT 23784 |||||||| ||||| || ||||| |||||||| ||||| | | ||||| | ||| Sbjct 481769 GATCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCCGAC 481828 Query 23785 TACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 |||||||| || ||||| || ||| | ||||| |||||| | ||||| || || Sbjct 481829 TACAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGG 481881 Score = 136 bits (150), Expect = 3e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || |||||||| | || ||||||||||||||| | ||||| || | | Sbjct 484085 AATGCAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTC 484144 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| | |||| | ||| |||||| ||||| |||||| | || ||||| || Sbjct 484145 AGACACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCA 484204 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || ||||| |||||||| ||||||| | ||||| || |||||||| Sbjct 484205 GCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAA 484264 Query 23790 CATACAAAAAGAGTCCAC 23807 ||||||||| || || || Sbjct 484265 CATACAAAAGGAATCTAC 484282 Score = 116 bits (128), Expect = 3e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 23656 GAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGT 23715 || ||||| || |||| ||| | |||| | ||| |||||| ||||| |||||| Sbjct 483903 GAGGTTGAATCATCGGATACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGT 483962 Query 23716 GTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACT 23775 | || ||||| || |||||||| || ||||| |||||||| ||||||| | ||||| Sbjct 483963 ATTCCTCCAGACCAGCAGCGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACA 484022 Query 23776 TTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || ||||||||||||||||| || |||||||| ||||| || || Sbjct 484023 TTGTCTGATTACAACATACAAAAGGAATCCACATTGCATTTGGTGTT 484069 >seq2 Length=5618958 Score = 152 bits (168), Expect = 3e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||| |||||||||||||| || || || ||||| || ||| | |||||||| | Sbjct 3064101 AAAATGCAAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCT 3064042 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||||| |||||| | || |||||| || |||||||| | || |||||| Sbjct 3064041 TCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGAT 3063982 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 ||||| ||||| ||||| || ||||| ||| ||||||| | ||||| ||| ||| || Sbjct 3063981 CAACAACGTTTGATATTCGCTGGCAAGCAATTGGAAGATGGGCGCACGTTATCCGACTAT 3063922 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||||||||| ||||| || || || || || Sbjct 3063921 AACATACAAAAGGAGTCGACCTTGCACTTGGT 3063890 >seq32 Length=1919080 Score = 138 bits (152), Expect = 8e-28 Identities = 171/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || |||||||| ||||| || || |||||||| || || || || Sbjct 39422 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 39363 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||||||| | |||| ||||| || ||| |||||||| || | || || || Sbjct 39362 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 39303 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || || || || || || || || ||| ||||||| | ||||| || |||||| Sbjct 39302 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTAT 39243 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCA 23841 || || |||||||| ||||| |||||| | || | | |||||||| ||| || Sbjct 39242 AATATTCAAAAAGAATCCACCTTACATCTTGTGCTGCGTTTGCGAGGTGGAGCA 39189 >seq66 Length=1297373 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| ||||| | ||||| | || ||||| | || | || | Sbjct 241339 AAAATGCAGATTTTCGTGAAAACGTTAACGGGCCATACCCTCACTTTAGATGCCGAACCG 241398 Query 23668 ACGGACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 || || ||| |||||| |||||||| || ||| || || || || | || ||| | Sbjct 241399 ACCGATACTATTGAAACGATTAAAAC-CAAGATTCAGGATAAGGACGGCATCCCACCAAA 241457 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| | ||||| || | ||||||||| || |||||||| | |||| ||| || || Sbjct 241458 TCAGCGCCGTTTGATTTATGCCGGCAAGCAGCTGGAAGATGGTTGCACGTTAATGGACTA 241517 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||||||||||| | || || | ||||| ||||| Sbjct 241518 TAACATACAAAAGGGTTCGACTCTCCATTTGGTTTT 241553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338002489756808