Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq116 158 3e-33
seq32 156 1e-32
seq88 113 1e-19
seq21 98.7 2e-15
seq326 91.5 4e-13
seq194 89.7 1e-12
seq189 86.0 1e-11
seq687 84.2 5e-11
>seq116
Length=862150
Score = 158 bits (174), Expect = 3e-33
Identities = 160/206 (78%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569
||| ||||| ||||| ||||| | |||||||| | ||| || | |||||||| | |||
Sbjct 484289 GTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAACTG 484230
Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629
|| ||||| ||||| | || || ||||| || ||||||||||||||||| ||||| ||
Sbjct 484229 TTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT-TT 484171
Query 225630 TTGCTTCACAGCTT-CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688
|||||| | | || |||| |||||||| | ||| || || || |||||||| || || |
Sbjct 484170 TTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTGATCGTTTTTCCGG 484111
Query 225689 TCAAAGTTTTTATGAACACTTGCATT 225714
|||||||||| | || | |||||||
Sbjct 484110 TCAAAGTTTTAACAAATATTTGCATT 484085
Score = 107 bits (118), Expect = 5e-18
Identities = 119/156 (76%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576
|||||||| ||||| | |||||||| | ||| || | |||||||| | ||| || |||
Sbjct 484054 GTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAACTGTTTGCCA 483995
Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635
|| ||||| | || || ||||| || ||||||||||||||||| ||||| |||||| ||
Sbjct 483994 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT-TTTTGCTTT 483936
Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671
|| |||||| || || || | ||| || || ||
Sbjct 483935 AACGTTTTCGATAGTATCCGATGATTCAACCTCCAA 483900
Score = 96.9 bits (106), Expect = 8e-15
Identities = 113/150 (75%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627
||||| ||||| || || | ||||| || || || |||||||||||||| ||||| ||
Sbjct 474250 TGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGAAT- 474192
Query 225628 TTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCC 225686
||| || || ||| |||||| || || || | ||| || || || || || || |||||
Sbjct 474191 TTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTGCC 474132
Query 225687 CGTCAAAGTTTTTATGAACACTTGCATTTT 225716
|| || ||||||| || | |||||||||
Sbjct 474131 AGTTAATGTTTTTACAAAGATTTGCATTTT 474102
Score = 95.1 bits (104), Expect = 3e-14
Identities = 98/126 (78%), Gaps = 2/126 (2%)
Strand=Plus/Minus
Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT-CGAT 225647
|| || ||||| || ||||||||||||||||| ||||| |||||||| | | || ||||
Sbjct 482007 CGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT-TTTTGCTTTAACGTTTTCGAT 481949
Query 225648 GGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACAC 225707
|| ||||| | ||| || || || ||||| || || || ||||||||||| | || |
Sbjct 481948 AGTATCTGATGATTCTACCTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTAACAAATAT 481889
Query 225708 TTGCAT 225713
||||||
Sbjct 481888 TTGCAT 481883
>seq32
Length=1919080
Score = 156 bits (172), Expect = 1e-32
Identities = 164/216 (76%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560
||| ||||| || | |||||||||||||| | ||| ||||||| ||| || | |||||
Sbjct 39207 CAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGGCCATC 39266
Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620
||| | ||||| |||||||| || | |||||| |||||||| ||||| || || |||||
Sbjct 39267 TTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTC 39326
Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680
|| ||||| || ||| |||||| ||||| |||| ||| || || | ||||| ||
Sbjct 39327 CTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGT 39386
Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716
||||||||| | ||||||| || | ||||| ||
Sbjct 39387 CTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 39422
>seq88
Length=1074918
Score = 113 bits (124), Expect = 1e-19
Identities = 127/169 (75%), Gaps = 1/169 (1%)
Strand=Plus/Plus
Query 7553 AACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGC 7612
|| |||| || || || | || || ||||| ||| |||| ||||| || | || || |
Sbjct 102631 AAATTTATAATGTAATCGTAACAGCACATGCATTTATTATAATTTTGTTCATAGTAATAC 102690
Query 7613 CGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATA 7672
| |||| || || || |||||||||||||| ||||||||||| | || ||||||||||
Sbjct 102691 CTATTATAATCGGAGGATTCGGAAATTGATTAGTTCCTTTAATATTAGGAGCTCCTGATA 102750
Query 7673 TGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC 7721
| || ||||| | | || ||||||| ||||| ||||| || |||||
Sbjct 102751 TAGCCTTTCCCCGAATAAATAATATAACATTTTGGTTACT-CCCCCTTC 102798
Score = 86.0 bits (94), Expect = 1e-11
Identities = 76/94 (81%), Gaps = 1/94 (1%)
Strand=Plus/Minus
Query 370682 CCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATGGATCAAAA 370741
||||||||||| ||||||||||||||||| || ||||| || | || | |||| | ||
Sbjct 103181 CCAAAAAATCAAAATAAATGTTGATAAAGAATTGGATCTCCCTCACCAGCAGGATGAGAA 103122
Query 370742 AAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774
|| || ||||| ||||||| | ||||||| ||||
Sbjct 103121 AAACTTGTATTTAAATTTCGAACAGTTAATAACA 103088
>seq21
Length=2241434
Score = 98.7 bits (108), Expect = 2e-15
Identities = 101/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610
|||| |||| || |||||| |||| || |||| ||| |||| ||||| ||| | || ||
Sbjct 299577 CCAAATTTATAATGTTATTGTTACAGCCCATGTATTTATTATAATTTTTTTTATAGTAAT 299518
Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670
|| |||| || || || || || |||||||| ||||||||||| | || ||||||||
Sbjct 299517 ACCTATTATAATTGGAGGCTTTGGGAATTGATTAGTTCCTTTAATATTAGGGGCTCCTGA 299458
Query 7671 TATGGCTTTTCC 7682
||| || || ||
Sbjct 299457 TATAGCATTCCC 299446
>seq326
Length=298211
Score = 91.5 bits (100), Expect = 4e-13
Identities = 82/103 (80%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727
||| ||||||||| ||||||||||| || |||||||||||||| || ||||| || || |
Sbjct 6310 ATACTTCAGGATGTCCAAAAAATCAAAACAAATGTTGATAAAGAATTGGATCTCCACCTC 6251
Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770
| | ||||||||||| ||||| ||||| | || |||||
Sbjct 6250 CAGCAGGATCAAAAAATGATGTATTTAAATTACGATTTGTTAA 6208
>seq194
Length=542775
Score = 89.7 bits (98), Expect = 1e-12
Identities = 83/104 (80%), Gaps = 1/104 (1%)
Strand=Plus/Minus
Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731
||||||||||| ||||||||| ||||||||||| ||||| || ||||| ||| | ||||
Sbjct 34372 TTCAGGATGACAAAAAAATCAAAATAAATGTTGGTAAAGAATTGGATCACCTGCTCCTGC 34313
Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774
| |||| |||| ||||| ||||||| || ||||| ||||
Sbjct 34312 AGAATCACAAAATGATGTATTGAAATTTCGGTCTGTTAATAACA 34269
>seq189
Length=557295
Score = 86.0 bits (94), Expect = 1e-11
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611
||| | || ||||||||| |||| || ||||| ||| |||| ||||| || | || ||
Sbjct 3445 CAAATCTATAACGTTATTGTTACAGCACATGCATTTATTATAATTTTTTTCATAGTAATA 3386
Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671
|| |||| || || || || ||||||||||| ||||||||||| | | || |||||
Sbjct 3385 CCTATTATAATTGGAGGATTTGGAAATTGATTAGTTCCTTTAATATTAGAAGCCCCTGAC 3326
Query 7672 ATGGC 7676
|| ||
Sbjct 3325 ATAGC 3321
>seq687
Length=21045
Score = 84.2 bits (92), Expect = 5e-11
Identities = 81/104 (78%), Gaps = 5/104 (5%)
Strand=Plus/Minus
Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727
||| ||||||||||||||||||||| ||||| ||||| ||||| || || ||| |
Sbjct 5857 ATACTTCAGGATGACCAAAAAATCAAAATAAGTGTTGGTAAAGAATTGG-----GTCCTC 5803
Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAA 370771
||| ||||||||||| || || ||||||| ||||||| ||
Sbjct 5802 CTGCAGGATCAAAAAATGATGTGTTTAAATTTCGATCAGTTTAA 5759
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192504827917844
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |