Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq116 158 3e-33 seq32 156 1e-32 seq88 113 1e-19 seq21 98.7 2e-15 seq326 91.5 4e-13 seq194 89.7 1e-12 seq189 86.0 1e-11 seq687 84.2 5e-11 >seq116 Length=862150 Score = 158 bits (174), Expect = 3e-33 Identities = 160/206 (78%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 225510 GTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTG 225569 ||| ||||| ||||| ||||| | |||||||| | ||| || | |||||||| | ||| Sbjct 484289 GTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAACTG 484230 Query 225570 CTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTT 225629 || ||||| ||||| | || || ||||| || ||||||||||||||||| ||||| || Sbjct 484229 TTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT-TT 484171 Query 225630 TTGCTTCACAGCTT-CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCG 225688 |||||| | | || |||| |||||||| | ||| || || || |||||||| || || | Sbjct 484170 TTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTGATCGTTTTTCCGG 484111 Query 225689 TCAAAGTTTTTATGAACACTTGCATT 225714 |||||||||| | || | ||||||| Sbjct 484110 TCAAAGTTTTAACAAATATTTGCATT 484085 Score = 107 bits (118), Expect = 5e-18 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 |||||||| ||||| | |||||||| | ||| || | |||||||| | ||| || ||| Sbjct 484054 GTGGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAACTGTTTGCCA 483995 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC-TT 225635 || ||||| | || || ||||| || ||||||||||||||||| ||||| |||||| || Sbjct 483994 GCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT-TTTTGCTTT 483936 Query 225636 CACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 || |||||| || || || | ||| || || || Sbjct 483935 AACGTTTTCGATAGTATCCGATGATTCAACCTCCAA 483900 Score = 96.9 bits (106), Expect = 8e-15 Identities = 113/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| ||||| || || | ||||| || || || |||||||||||||| ||||| || Sbjct 474250 TGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGAAT- 474192 Query 225628 TTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCC 225686 ||| || || ||| |||||| || || || | ||| || || || || || || ||||| Sbjct 474191 TTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTGCC 474132 Query 225687 CGTCAAAGTTTTTATGAACACTTGCATTTT 225716 || || ||||||| || | ||||||||| Sbjct 474131 AGTTAATGTTTTTACAAAGATTTGCATTTT 474102 Score = 95.1 bits (104), Expect = 3e-14 Identities = 98/126 (78%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 225589 CGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT-CGAT 225647 || || ||||| || ||||||||||||||||| ||||| |||||||| | | || |||| Sbjct 482007 CGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGAT-TTTTGCTTTAACGTTTTCGAT 481949 Query 225648 GGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACAC 225707 || ||||| | ||| || || || ||||| || || || ||||||||||| | || | Sbjct 481948 AGTATCTGATGATTCTACCTCCAAAGTGATGGTTTTACCGGTCAAAGTTTTAACAAATAT 481889 Query 225708 TTGCAT 225713 |||||| Sbjct 481888 TTGCAT 481883 >seq32 Length=1919080 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 ||| ||||| || | |||||||||||||| | ||| ||||||| ||| || | ||||| Sbjct 39207 CAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGACAATGTGCGGCCATC 39266 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| | ||||| |||||||| || | |||||| |||||||| ||||| || || ||||| Sbjct 39267 TTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGAATTCCCTCTTTGTC 39326 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || ||||| || ||| |||||| ||||| |||| ||| || || | ||||| || Sbjct 39327 CTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACCTCAAGAGTGATGGT 39386 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||||||| | ||||||| || | ||||| || Sbjct 39387 CTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 39422 >seq88 Length=1074918 Score = 113 bits (124), Expect = 1e-19 Identities = 127/169 (75%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 7553 AACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGC 7612 || |||| || || || | || || ||||| ||| |||| ||||| || | || || | Sbjct 102631 AAATTTATAATGTAATCGTAACAGCACATGCATTTATTATAATTTTGTTCATAGTAATAC 102690 Query 7613 CGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATA 7672 | |||| || || || |||||||||||||| ||||||||||| | || |||||||||| Sbjct 102691 CTATTATAATCGGAGGATTCGGAAATTGATTAGTTCCTTTAATATTAGGAGCTCCTGATA 102750 Query 7673 TGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC 7721 | || ||||| | | || ||||||| ||||| ||||| || ||||| Sbjct 102751 TAGCCTTTCCCCGAATAAATAATATAACATTTTGGTTACT-CCCCCTTC 102798 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/94 (81%), Gaps = 1/94 (1%) Strand=Plus/Minus Query 370682 CCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATGGATCAAAA 370741 ||||||||||| ||||||||||||||||| || ||||| || | || | |||| | || Sbjct 103181 CCAAAAAATCAAAATAAATGTTGATAAAGAATTGGATCTCCCTCACCAGCAGGATGAGAA 103122 Query 370742 AAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 || || ||||| ||||||| | ||||||| |||| Sbjct 103121 AAACTTGTATTTAAATTTCGAACAGTTAATAACA 103088 >seq21 Length=2241434 Score = 98.7 bits (108), Expect = 2e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| || |||||| |||| || |||| ||| |||| ||||| ||| | || || Sbjct 299577 CCAAATTTATAATGTTATTGTTACAGCCCATGTATTTATTATAATTTTTTTTATAGTAAT 299518 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || || || || || |||||||| ||||||||||| | || |||||||| Sbjct 299517 ACCTATTATAATTGGAGGCTTTGGGAATTGATTAGTTCCTTTAATATTAGGGGCTCCTGA 299458 Query 7671 TATGGCTTTTCC 7682 ||| || || || Sbjct 299457 TATAGCATTCCC 299446 >seq326 Length=298211 Score = 91.5 bits (100), Expect = 4e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||||||||| ||||||||||| || |||||||||||||| || ||||| || || | Sbjct 6310 ATACTTCAGGATGTCCAAAAAATCAAAACAAATGTTGATAAAGAATTGGATCTCCACCTC 6251 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 | | ||||||||||| ||||| ||||| | || ||||| Sbjct 6250 CAGCAGGATCAAAAAATGATGTATTTAAATTACGATTTGTTAA 6208 >seq194 Length=542775 Score = 89.7 bits (98), Expect = 1e-12 Identities = 83/104 (80%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||||| ||||||||| ||||||||||| ||||| || ||||| ||| | |||| Sbjct 34372 TTCAGGATGACAAAAAAATCAAAATAAATGTTGGTAAAGAATTGGATCACCTGCTCCTGC 34313 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 | |||| |||| ||||| ||||||| || ||||| |||| Sbjct 34312 AGAATCACAAAATGATGTATTGAAATTTCGGTCTGTTAATAACA 34269 >seq189 Length=557295 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| | || ||||||||| |||| || ||||| ||| |||| ||||| || | || || Sbjct 3445 CAAATCTATAACGTTATTGTTACAGCACATGCATTTATTATAATTTTTTTCATAGTAATA 3386 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||||| ||||||||||| | | || ||||| Sbjct 3385 CCTATTATAATTGGAGGATTTGGAAATTGATTAGTTCCTTTAATATTAGAAGCCCCTGAC 3326 Query 7672 ATGGC 7676 || || Sbjct 3325 ATAGC 3321 >seq687 Length=21045 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 5/104 (5%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||||||||||||||||||||| ||||| ||||| ||||| || || ||| | Sbjct 5857 ATACTTCAGGATGACCAAAAAATCAAAATAAGTGTTGGTAAAGAATTGG-----GTCCTC 5803 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAA 370771 ||| ||||||||||| || || ||||||| ||||||| || Sbjct 5802 CTGCAGGATCAAAAAATGATGTGTTTAAATTTCGATCAGTTTAA 5759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192504827917844