Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq512 302 4e-77 >seq512 Length=181763 Score = 302 bits (334), Expect = 4e-77 Identities = 504/716 (70%), Gaps = 18/716 (3%) Strand=Plus/Minus Query 4374 AGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATT 4433 ||||| || || || ||| |||||||||| | | ||| ||||| ||| || |||||| Sbjct 52833 AGCAAACGATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCATGCCAATT 52774 Query 4434 AATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATT 4493 || || |||| || | |||||||||||||| ||| || | ||||| ||||| ||| Sbjct 52773 AAGTCGACTGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGGCATCTGTTATT 52714 Query 4494 ATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCA 4553 || || || |||||| ||||| | || ||| | | ||||| ||| |||| Sbjct 52713 ATCTCCAAAATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACATTAATACCGCA 52654 Query 4554 AAATCACAATGCAAACCTTCGTCTC-TGCTAATCAGTTCGTTAGAAAACGTTAATCCGGG 4612 || ||||| || || ||||| || | || || ||| ||| ||||| || ||||| || || Sbjct 52653 AATTCACAGTGTAAGCCTTCATCGCGTGATA-TCATTTCATTAGAGAATGTTAAACCTGG 52595 Query 4613 CATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCC 4672 ||||| || | || || ||||||||||| | || || ||| |||||| || || Sbjct 52594 CATTATTCCACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACTAAAGAAAATACC 52535 Query 4673 TTCTACGGCGGCAAACGCTACTAATCGGG-ACCCGAACGAGCTGGCTTTGTCTTTAATCC 4731 ||| ||||| || || |||| | || ||| || ||||| | | || ||| Sbjct 52534 TTCGACGGCAGCGAAAGCTATGACACGTTCACCAAAATTAGCTGAATGCGATGATA-TCC 52476 Query 4732 ATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATA 4791 || || ||||| | || || |||||||| | || ||||| | ||||| ||||||| Sbjct 52475 ATGCTAGAGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATAGCATTAAATA 52416 Query 4792 ---ATTTACTTT-TTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATT 4847 ||| || || |||| || | ||| |||| || || || |||| ||||||||| Sbjct 52415 GATATTCACGTTCTTTCTCATC---CATGA-TATATGTTTCGATAAGTAAACTATACATT 52360 Query 4848 TCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACT 4907 || || || | |||||| || ||||| ||||| || |||||||| | |||||| |||| | Sbjct 52359 TCCGAGTGCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCAGTTATT 52300 Query 4908 TGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCA 4967 ||||| || | |||||| ||| ||||| || || || || ||||| || || ||| Sbjct 52299 TGAACCTCTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCA 52240 Query 4968 AAAAACGCCAAAACATGAGATATAAAGTACTGTT---CGTCAGGCTTAAGTTTTTTCCAG 5024 ||||| ||||| ||||| || ||||| | ||| ||||| ||||| ||||| Sbjct 52239 AAAAAAGCCAAGACATGTGAAATAAAATGACGTTCGCCGTCA--CTTAA-CCGATTCCAA 52183 Query 5025 TGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 | | || ||||||| | ||||| |||||| |||||||||| || |||||||| Sbjct 52182 TCGTCCATGTCTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTCCGC 52127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427040616744758