Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_030919.1 Length=42418 Score E Sequences producing significant alignments: (Bits) Value seq347 363 4e-96 >seq347 Length=3601 Score = 363 bits (402), Expect = 4e-96 Identities = 628/908 (69%), Gaps = 6/908 (1%) Strand=Plus/Minus Query 1774 TATTTAGGCCGCTGTTTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCT 1833 ||| |||| | | ||| ||||| || || |||| ||||||||||| || || | || Sbjct 2866 TATCTAGGTCTGTTTTTTGTTTCAATATATATTCGTCCAATATATTCACCCAGCACCCCG 2807 Query 1834 ATTCCTATCAATTGAACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCA 1893 || || || ||||| || ||||| | || |||| | || | | || || || || Sbjct 2806 ATACCGATTAATTGCACTCCACCAATAAATAGAATGGCTACCATCAATGATGGATAACCT 2747 Query 1894 GGAACATTATTTCCAAATATTAATTTATCAATAATCATCCATGCACCGTAAAGGAATGAC 1953 || || || ||||||| |||||| |||| |||||||| || || || || || Sbjct 2746 GGGACTGGGTTACCAAATAGTAATTTGTCAACCGTCATCCATAGGCCATATAGAAAAGAA 2687 Query 1954 ATACCTGCAATAAACAATCCAATGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAA 2013 | || | | || || || || ||||| || | | || | ||||| ||||| Sbjct 2686 AGTGAAGCGACACCAAAACCGATATACGTCCACATTCTTAAAGGGATAGTTGAAAAAGAT 2627 Query 2014 GTTATTCCCTCCAGCGCCAGGTTCCATAATTTCCAGCCGTTGAATTTCGAATCA-CCGGC 2072 ||||| || || || || | |||||||||||||| | | || || | | | ||||| Sbjct 2626 GTTATCCCTTCAAGAGCTAAATTCCATAATTTCCACCAACTAAACTT-GCTTGATCCGGC 2568 Query 2073 CACGCGTTCGGCACGGGCATATTTAACAACATCCGTTTTTCCGCCAACCCAACTGAGCAC 2132 || || ||||| | ||| |||| | || |||||||| | ||| |||| Sbjct 2567 TGATCGCTCAGCACGAGTGTATGTAACCATTTCTACTTTTCCGCTCATCCATGACAGCAA 2508 Query 2133 ACCCTTCATAAACAAGTTGCGTTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCT 2192 ||| ||||| || | ||| ||||| |||| | || || || || || |||| Sbjct 2507 ACCTTTCATGAAAAGGTTACGTTCAGGCAAACACGTAATATTTTCTACGACTTCACGTGA 2448 Query 2193 CATTAACCGAAAGTCGCCAACATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCAG 2252 || || |||||||| ||||||| |||||| |||||| | |||||||||| ||||| || Sbjct 2447 TATCAAACGAAAGTCACCAACATGTTCTTCAATTTTTTGCGTGCTGATTTTGTTGTGTAG 2388 Query 2253 CTTATAAAACCACTCAGCTGTCTTACGCTTCATGCGCCCGTCAGTTGAGCGGTCTGAGCG 2312 | |||||||| || || || || ||||| | ||| ||||| | ||||| ||| Sbjct 2387 TCTGTAAAACCATTCTGCCGTTTTTCGCTTTAATTTCCCATCAGTCGTACGGTCAATGCG 2328 Query 2313 CTTAGCCAGCACCATATCCGCGCCAGCCTGCCACTTCTCAATGAGATGAGGGATAACTTC 2372 |||||||| || | ||| || || || ||||||||||||| | || || || | | Sbjct 2327 TTTAGCCAGTACAACATCAGCACCTGCTCGCCACTTCTCAATCATCTGTGGTATGATATT 2268 Query 2373 TATCGGATCCTGTAAATCGACATCAATAGGAATGACCGCATCCCCGGTTGCATGGTCGAG 2432 || |||||| | |||||| |||||||| | || | ||||| || || ||||| || | Sbjct 2267 TAACGGATCTTATAAATCTACATCAATGGATATAATTGCATCTCCAGTGGCATGTTCTAA 2208 Query 2433 ACCCGCGAAAAGAGCAGGTTCTTTACCGAAGTTTCGCGTAAA--CGAAAGCGGAATAACG 2490 || |||||||| |||||||||||||| |||||||| ||||| || ||| |||| Sbjct 2207 TCCTGCGAAAAGTGCAGGTTCTTTACCAAAGTTTCGAGTAAAGCTGATAGC--CTTAACC 2150 Query 2491 AGCGGATCAGATGCAGCTATTTTGTTAATTATTGATTCAGTCGCATCTTTACTACCATCA 2550 | ||||||||| ||| | ||||| | ||||| ||| ||||||||||| Sbjct 2149 ATTGGATCAGATATTTCTAATACATTAATCAAGCTCTCAGTATTGTCTGTACTACCATCA 2090 Query 2551 TTAATAAAAACGATCTCAATTTCATATTCTTTTAGCTCATTAAACTCACGTACCGTTTTA 2610 ||||| || || | ||| || | ||||| |||||||| ||| || | ||||| |||| Sbjct 2089 TTAATGAACACTACCTCTATATTATATTGATTTAGCTCTGGAAATTCTCTTACCGATTTA 2030 Query 2611 TAGAAAATCGGTATCGTGTCTTCTTCGTTAAAAACTGGAACGACAAGAGAGATTTTCATC 2670 || ||||||||||| | | |||||| |||||||| || || || | || || ||||| Sbjct 2029 TAAAAAATCGGTATGGATTTTTCTTCATTAAAAACAGGGACAACTAACGAAATCTTCATG 1970 Query 2671 TTATATCC 2678 | ||||| Sbjct 1969 TGTTATCC 1962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 135613220380560