Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_030919.1
Length=42418
Score E
Sequences producing significant alignments: (Bits) Value
seq347 363 4e-96
>seq347
Length=3601
Score = 363 bits (402), Expect = 4e-96
Identities = 628/908 (69%), Gaps = 6/908 (1%)
Strand=Plus/Minus
Query 1774 TATTTAGGCCGCTGTTTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCT 1833
||| |||| | | ||| ||||| || || |||| ||||||||||| || || | ||
Sbjct 2866 TATCTAGGTCTGTTTTTTGTTTCAATATATATTCGTCCAATATATTCACCCAGCACCCCG 2807
Query 1834 ATTCCTATCAATTGAACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCA 1893
|| || || ||||| || ||||| | || |||| | || | | || || || ||
Sbjct 2806 ATACCGATTAATTGCACTCCACCAATAAATAGAATGGCTACCATCAATGATGGATAACCT 2747
Query 1894 GGAACATTATTTCCAAATATTAATTTATCAATAATCATCCATGCACCGTAAAGGAATGAC 1953
|| || || ||||||| |||||| |||| |||||||| || || || || ||
Sbjct 2746 GGGACTGGGTTACCAAATAGTAATTTGTCAACCGTCATCCATAGGCCATATAGAAAAGAA 2687
Query 1954 ATACCTGCAATAAACAATCCAATGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAA 2013
| || | | || || || || ||||| || | | || | ||||| |||||
Sbjct 2686 AGTGAAGCGACACCAAAACCGATATACGTCCACATTCTTAAAGGGATAGTTGAAAAAGAT 2627
Query 2014 GTTATTCCCTCCAGCGCCAGGTTCCATAATTTCCAGCCGTTGAATTTCGAATCA-CCGGC 2072
||||| || || || || | |||||||||||||| | | || || | | | |||||
Sbjct 2626 GTTATCCCTTCAAGAGCTAAATTCCATAATTTCCACCAACTAAACTT-GCTTGATCCGGC 2568
Query 2073 CACGCGTTCGGCACGGGCATATTTAACAACATCCGTTTTTCCGCCAACCCAACTGAGCAC 2132
|| || ||||| | ||| |||| | || |||||||| | ||| ||||
Sbjct 2567 TGATCGCTCAGCACGAGTGTATGTAACCATTTCTACTTTTCCGCTCATCCATGACAGCAA 2508
Query 2133 ACCCTTCATAAACAAGTTGCGTTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCT 2192
||| ||||| || | ||| ||||| |||| | || || || || || ||||
Sbjct 2507 ACCTTTCATGAAAAGGTTACGTTCAGGCAAACACGTAATATTTTCTACGACTTCACGTGA 2448
Query 2193 CATTAACCGAAAGTCGCCAACATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCAG 2252
|| || |||||||| ||||||| |||||| |||||| | |||||||||| ||||| ||
Sbjct 2447 TATCAAACGAAAGTCACCAACATGTTCTTCAATTTTTTGCGTGCTGATTTTGTTGTGTAG 2388
Query 2253 CTTATAAAACCACTCAGCTGTCTTACGCTTCATGCGCCCGTCAGTTGAGCGGTCTGAGCG 2312
| |||||||| || || || || ||||| | ||| ||||| | ||||| |||
Sbjct 2387 TCTGTAAAACCATTCTGCCGTTTTTCGCTTTAATTTCCCATCAGTCGTACGGTCAATGCG 2328
Query 2313 CTTAGCCAGCACCATATCCGCGCCAGCCTGCCACTTCTCAATGAGATGAGGGATAACTTC 2372
|||||||| || | ||| || || || ||||||||||||| | || || || | |
Sbjct 2327 TTTAGCCAGTACAACATCAGCACCTGCTCGCCACTTCTCAATCATCTGTGGTATGATATT 2268
Query 2373 TATCGGATCCTGTAAATCGACATCAATAGGAATGACCGCATCCCCGGTTGCATGGTCGAG 2432
|| |||||| | |||||| |||||||| | || | ||||| || || ||||| || |
Sbjct 2267 TAACGGATCTTATAAATCTACATCAATGGATATAATTGCATCTCCAGTGGCATGTTCTAA 2208
Query 2433 ACCCGCGAAAAGAGCAGGTTCTTTACCGAAGTTTCGCGTAAA--CGAAAGCGGAATAACG 2490
|| |||||||| |||||||||||||| |||||||| ||||| || ||| ||||
Sbjct 2207 TCCTGCGAAAAGTGCAGGTTCTTTACCAAAGTTTCGAGTAAAGCTGATAGC--CTTAACC 2150
Query 2491 AGCGGATCAGATGCAGCTATTTTGTTAATTATTGATTCAGTCGCATCTTTACTACCATCA 2550
| ||||||||| ||| | ||||| | ||||| ||| |||||||||||
Sbjct 2149 ATTGGATCAGATATTTCTAATACATTAATCAAGCTCTCAGTATTGTCTGTACTACCATCA 2090
Query 2551 TTAATAAAAACGATCTCAATTTCATATTCTTTTAGCTCATTAAACTCACGTACCGTTTTA 2610
||||| || || | ||| || | ||||| |||||||| ||| || | ||||| ||||
Sbjct 2089 TTAATGAACACTACCTCTATATTATATTGATTTAGCTCTGGAAATTCTCTTACCGATTTA 2030
Query 2611 TAGAAAATCGGTATCGTGTCTTCTTCGTTAAAAACTGGAACGACAAGAGAGATTTTCATC 2670
|| ||||||||||| | | |||||| |||||||| || || || | || || |||||
Sbjct 2029 TAAAAAATCGGTATGGATTTTTCTTCATTAAAAACAGGGACAACTAACGAAATCTTCATG 1970
Query 2671 TTATATCC 2678
| |||||
Sbjct 1969 TGTTATCC 1962
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 135613220380560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |