Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq162 502 3e-137 seq512 280 2e-70 >seq162 Length=626193 Score = 502 bits (556), Expect = 3e-137 Identities = 1254/1885 (67%), Gaps = 32/1885 (2%) Strand=Plus/Minus Query 76773 TTATCCAATGTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCA 76832 ||||| | ||||||||| || ||| | ||| || || || | ||| || |||||||| Sbjct 500935 TTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATACCG 500876 Query 76833 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGA 76892 ||||||| || | |||| || || ||||| || | | |||| ||||||||| Sbjct 500875 GTTTTTAAGCCGACTTTCCAACCATAAAAATGTATAGAAGATAATTTGCCATAACTAGGT 500816 Query 76893 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 76952 | |||| ||| || || | || || ||||| ||||| |||||||| | |||| | ||| Sbjct 500815 TGAGCTACATGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCC 500756 Query 76953 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 77012 || || || | | ||| | ||||||||||| ||||| | | || ||| || Sbjct 500755 ATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATGCTT 500696 Query 77013 TCTGG-AAGGTTT--GTATTTTGAATGGAACCACCATCTGATATAATTGTATTCTTTATA 77069 || || | || || | ||||| || || || | || || | ||| || || || Sbjct 500695 TCAGGTATGGCTTCGATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTTCATG 500636 Query 77070 TCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGA 77129 | ||||||||| | | || || ||| || |||| | |||| |||| |||| | Sbjct 500635 TTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGATA 500576 Query 77130 AATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCA 77189 || || ||||||| ||| | || |||| |||||| || ||||| || | ||| ||| Sbjct 500575 AACTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAAAGACTCA 500516 Query 77190 TTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTT 77249 ||||| || | ||||||||||||||| || || ||||| || || || | || ||| Sbjct 500515 TTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGGAATTG 500456 Query 77250 CTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGT 77309 | | |||| || | || | ||| |||| ||||| ||| ||||| | ||| Sbjct 500455 CGCACTCCATAACTTTTAATGTCGCTTTTAAGATCCGACCAATTCCATAGATCAGTAGGC 500396 Query 77310 ACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATGTT 77369 |||||| | ||| ||||| || || | |||||| | || | ||||||| Sbjct 500395 GTTTTATCCCACATATCATATTGAAGGATAGCTTTACTAACTGGACTACCTTCATATGTT 500336 Query 77370 TCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATT 77429 || || || | | | || || | ||||||||| |||| || | |||||||| ||| Sbjct 500335 TCGTACGGACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTCACCGTAATATATT 500276 Query 77430 GTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAAT---ACTATCAAACGGATAATGT 77486 ||||| ||||| | ||||| | | | | || || | || ||| | || ||| | Sbjct 500275 GTTTCAAAAATTTGTTTATTTA-AGC--GAGCAGCATTTTCGCTTTCATAGGGGTAACGC 500219 Query 77487 AAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTA 77546 | | ||| | || || || ||||| || || || | |||||| || | ||| | | Sbjct 500218 ATTAAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAAA 500159 Query 77547 TTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAG---A 77603 || || || | | ||| || | ||||| ||||| || || || ||||| ||||| Sbjct 500158 TTAGACTTTCTGGTTTCCGGCAACGGATAGTAATTGATATCGATTATTTTGTTGAGGTTC 500099 Query 77604 TTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCT--- 77660 ||| | | || |||| | || || || ||||| |||||||| || | |||| Sbjct 500098 TTTGTTATAA--GCTTT-GCAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGTC 500042 Query 77661 ATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTG 77720 | |||||||| ||||| || || ||||||| ||| |||||||||| || | ||| Sbjct 500041 GTTACAAACATATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAGCCGAC 499982 Query 77721 GCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGG 77780 | ||||| | || || ||||| | ||||| ||||| |||||||| | ||| ||||| Sbjct 499981 GTATATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGA 499922 Query 77781 TTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGT 77840 || || || ||| || | || || ||||| || | ||||| ||||| || | || Sbjct 499921 TTACTTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTGG 499862 Query 77841 G-ATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCGC----C 77895 | | | || || | | | | | | ||||||| || | ||||| |||| | Sbjct 499861 GCACTGCAT-ATTGCGAACTACTAGTCACGAGCTTTT---ATTGTTTTGT-TCGCTTTGC 499807 Query 77896 TCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATC 77955 ||| |||||||| | |||| | ||||||| ||||| ||| ||| ||| | Sbjct 499806 CCTCGTCTTCATATTTCATGTATAATCTATCAAATTTGTCTCCATAAATTTCACACAAGC 499747 Query 77956 CAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAA 78015 ||||||||| || || ||||| | ||||| | |||| ||| ||||| |||||| | Sbjct 499746 CAGGGCATTTATGGGGACACATTAGAGACCAATGCTCATCAGCCTCAACTCTTTTCATGA 499687 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTG 78075 | | ||| || ||||| |||||| ||||| ||| || | | | ||| || ||||| | Sbjct 499686 ACAAATCGGGGATCCACAGAGCATAAAATAAATCCCGTGCACGGTCTTCCTCCTTTCCCG 499627 Query 78076 TATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTG 78135 |||||||||| | | ||||| || | |||||| | |||||| || |||| ||||| | Sbjct 499626 TATTCTTTTTCAAGTTTAGAAATTCGAAAATATCTGCATGCCAAGGCTCTAAGTATATAG 499567 Query 78136 CCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAA 78195 | | | | || || ||||| ||| || || || | ||| | ||| || || | | Sbjct 499566 CAAAAGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACA 499507 Query 78196 CTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCAC 78255 | ||||| |||| || ||||| |||| | || | | ||||| || | | | || | Sbjct 499506 GACGTAACATAGGAACAAGACCGTCAGATACTTCACTATTACCAGATATCTTAGTCCCTC 499447 Query 78256 TTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGC 78315 |||| || || | ||| || |||||||| || ||| |||||| ||| ||| | Sbjct 499446 TTGCTCGTATGCAATGAATATTTAGACCTATTCCACCGGCCGCCTTAGAAATTTTAGCAC 499387 Query 78316 A-ACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT-GTTAAGAAGAAA 78373 | || | | || || ||||| || || ||| ||| ||| |||| ||| | Sbjct 499386 ATTGGTCTATAGCCTTCATA-ATACCATCAATGGAGTCTTCCGGCATAGTTAGCAAG-AC 499329 Query 78374 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGT 78433 ||| |||| ||| | | | || | ||| |||||| || || || ||||| || Sbjct 499328 GCAGGACGACAATTGCGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAGT 499269 Query 78434 AAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATG 78493 ||| | || || | ||||| || ||||||||||| | ||| ||||| | || Sbjct 499268 AAAGTAACCCTCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGTCACCGCCGTG 499209 Query 78494 AATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTAT 78553 ||| || | || |||||||| ||||||||||| || | || || | || || || Sbjct 499208 AATGCCAATAGCGACACGCATTAACATATGCTGTGGCCGCTCCACAATTTTGCCGTTAAT 499149 Query 78554 TTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCT 78613 || || || || ||| ||| ||||||||||| |||||| | || || ||| || | Sbjct 499148 CTTTAATAAATAAGATCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAATTAAAATCGCG 499089 Query 78614 CTCGTAAATAATAACAGAATTTAGT 78638 || |||||||| ||||||| ||| Sbjct 499088 ATCACAAATAATAGCAGAATTCAGT 499064 >seq512 Length=181763 Score = 280 bits (310), Expect = 2e-70 Identities = 486/704 (69%), Gaps = 13/704 (2%) Strand=Plus/Minus Query 47975 ATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 48034 ||| ||||| ||||||||||| | ||| |||| | ||||| || || | | || Sbjct 52825 ATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCATGCCAATTAAGTCGAC 52766 Query 48035 TGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGATGT 48094 ||||| || || || | |||||||| ||| || | || ||||| ||||||| Sbjct 52765 TGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGGCATCTGTTATTATCTCCAA 52706 Query 48095 TACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAATCACA 48154 | | ||| | ||| ||| | | ||||||||||||||||| ||||| ||||| Sbjct 52705 AATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACATTAATACCGCAAATTCACA 52646 Query 48155 ATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCC 48214 || | |||||||| | || | ||| ||||| ||||| | ||| ||||||| ||| Sbjct 52645 GTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGAATGTTAAACCTGGCATTATTCC 52586 Query 48215 ACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGC 48274 |||||| || ||||||||||| | ||||| ||| |||||| || ||||| ||||| Sbjct 52585 ACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACTAAAGAAAATACCTTCGACGGC 52526 Query 48275 CGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTT----CGTTGTGTATCCACCGTTGTG 48330 || || || | | | || || || | ||| || || |||||| | | | Sbjct 52525 AGCGAAAGCTATGACACGTTCACCAAAATTAGCTGAATGCGATGA-TATCCATGCTAGAG 52467 Query 48331 CCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtttt 48390 |||| || ||||||||||| || | |||||||| || ||||||||||| ||| | | Sbjct 52466 CCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATAGCATTAAATAGATATTCAC 52407 Query 48391 tttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 ||| || ||| | | || || || || | | |||||||||||| ||||| | || Sbjct 52406 GTTCTTTCTCATCCATGATATATGTTTCGATAAGTAAACTATACATTTCCGAGTGCACAT 52347 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTAC 48510 |||| || || || ||||| || ||||| || | ||||| || || || ||||| Sbjct 52346 TTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCAGTTATTTGAACCTCTTGGG 52287 Query 48511 AAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATA 48570 |||||||||| | ||||||||||| || || ||||| || |||||||| || || | Sbjct 52286 AAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCCAAGA 52227 Query 48571 CATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTT----TATTCCAGTCATTGATATCT 48626 ||||| ||||||| | |||| | |||| || |||||| || | || ||| Sbjct 52226 CATGTGAAATAAAA----TGACGTTCGCCGTCACTTAACCGATTCCAATCGTCCATGTCT 52171 Query 48627 TTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 || || | || || |||||||| |||||||| || || || || Sbjct 52170 TTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTCCGC 52127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694653812520640