Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq162 484 9e-132 seq512 288 1e-72 >seq162 Length=626193 Score = 484 bits (536), Expect = 9e-132 Identities = 1247/1881 (66%), Gaps = 24/1881 (1%) Strand=Plus/Minus Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427 ||||| | || ||||| |||||| | |||||| || || | ||| || |||||||| Sbjct 500935 TTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATACCG 500876 Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487 ||||||| || | |||| || || ||||| || | || |||| |||||| || Sbjct 500875 GTTTTTAAGCCGACTTTCCAACCATAAAAATGTATAGAAGATAATTTGCCATAACTAGGT 500816 Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547 | |||| ||| || || | || || ||||| ||||| |||||||| | |||| | ||| Sbjct 500815 TGAGCTACATGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCC 500756 Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 75607 || || || | | ||| | ||||||||||| ||||| | | || ||| || Sbjct 500755 ATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATGCTT 500696 Query 75608 TCTGGAA--GATTTG-TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATC 75664 || || | | || | | ||||| || || || | || | | ||| || || || Sbjct 500695 TCAGGTATGGCTTCGATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTTCATG 500636 Query 75665 TCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGA 75724 | ||||||||| | || || ||| || |||| | |||| |||| || | | Sbjct 500635 TTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGATA 500576 Query 75725 AATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCA 75784 || || ||||||| ||| | ||| |||| |||||| || ||||| || | ||| ||| Sbjct 500575 AACTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAAAGACTCA 500516 Query 75785 TTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTT 75844 ||||| || | |||||||||||| || || || ||||| || || || | || ||| Sbjct 500515 TTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGGAATTG 500456 Query 75845 CTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGT 75904 | | |||| || | || | ||| |||| ||||| ||| ||||| | || Sbjct 500455 CGCACTCCATAACTTTTAATGTCGCTTTTAAGATCCGACCAATTCCATAGATCAGTAGGC 500396 Query 75905 ACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTT 75964 |||||| | ||| ||||| || || | || ||| | || | ||||||| Sbjct 500395 GTTTTATCCCACATATCATATTGAAGGATAGCTTTACTAACTGGACTACCTTCATATGTT 500336 Query 75965 TCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATT 76024 ||||| | | || | || || | ||| ||||| | ||||| |||||||||| ||| Sbjct 500335 TCGTACGGACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTCACCGTAATATATT 500276 Query 76025 GTTTCGAAAATCTTCTTATTAAGATCTTGC-GCTTCAAGACTATCAAAAGGATAATGTAA 76083 ||||| ||||| | ||||| | | | || || | || ||| | || ||| | | Sbjct 500275 GTTTCAAAAATTTGTTTATTTA-AGCGAGCAGCATTTTCGCTTTCATAGGGGTAACGCAT 500217 Query 76084 AAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 76143 | ||| | ||| || || | ||| || || || | |||||| || | ||| | ||| Sbjct 500216 TAAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAAATT 500157 Query 76144 GGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT-TC 76202 || || | ||| || | || || ||||| ||||| || ||||| ||||| || | Sbjct 500156 AGACTTTCTGGTTTCCGGCAACGGATAGTAATTGATATCGATTATTTTGTTGAGGTTCTT 500097 Query 76203 TGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTATC---A 76259 || | |||| | || || || |||||| |||||||| ||| | |||| || | Sbjct 500096 TGTTATAAGCTTT-GCAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGTCGTTA 500038 Query 76260 CAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCAT 76319 |||||||||| | || || ||||||| ||| ||||| |||| || | ||| | || Sbjct 500037 CAAACATATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAGCCGACGTAT 499978 Query 76320 ATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGC 76379 ||| | || || || || | ||||| || || ||||| |||| ||| ||||| || | Sbjct 499977 ATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATTAC 499918 Query 76380 TCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTG-AT 76438 | || ||||| | || || ||||| | | |||||||| || || | || | | Sbjct 499917 TTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTGGGCAC 499858 Query 76439 TCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTT----CTC 76494 | || || | | | | | | |||||||||| | ||||| |||||| ||| Sbjct 499857 TGCAT-ATTGCGAACTACTAGTCACGAGCTTTTATT---GTTTTGT-TCGCTTTGCCCTC 499803 Query 76495 TCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGG 76554 |||||||| | ||||| | ||||||| ||||| ||| ||| ||| ||||| Sbjct 499802 GTCTTCATATTTCATGTATAATCTATCAAATTTGTCTCCATAAATTTCACACAAGCCAGG 499743 Query 76555 ACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAG 76614 |||| || |||||||| | ||||| | |||| ||| ||| | |||||| || | Sbjct 499742 GCATTTATGGGGACACATTAGAGACCAATGCTCATCAGCCTCAACTCTTTTCATGAACAA 499683 Query 76615 ATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATT 76674 ||| || ||||| |||||| ||||| ||| || | | ||| || ||||| ||||| Sbjct 499682 ATCGGGGATCCACAGAGCATAAAATAAATCCCGTGCACGGTCTTCCTCCTTTCCCGTATT 499623 Query 76675 CTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCAT 76734 |||||| | | ||| || || | |||||| | |||||| || |||| ||||| || | Sbjct 499622 CTTTTTCAAGTTTAGAAATTCGAAAATATCTGCATGCCAAGGCTCTAAGTATATAGCAAA 499563 Query 76735 AACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCT 76794 | | ||||| ||||| ||| || || || | ||| | |||| || || | | | Sbjct 499562 AGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACAGACG 499503 Query 76795 CAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGC 76854 ||||| |||| || |||| |||| || | | ||||| || | | | || | ||| Sbjct 499502 TAACATAGGAACAAGACCGTCAGATACTTCACTATTACCAGATATCTTAGTCCCTCTTGC 499443 Query 76855 ACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACA-GC 76913 || || | |||| ||| |||||||| || ||| ||||| ||| |||||| Sbjct 499442 TCGTATGCAATGAATATTTAGACCTATTCCACCGGCCGCCTTAGAAATTTTAGCACATTG 499383 Query 76914 GTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGAAGAAAACAG 76972 || | | ||||| || || || || || ||| ||| |||| ||| | ||| Sbjct 499382 GTCTATAGCCTTCATA-ATACCATCAATGGAGTCTTCCGGCATAGTTAGCAAG-ACGCAG 499325 Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032 |||| ||| | | | || | ||| ||| || || || || |||||||| || Sbjct 499324 GACGACAATTGCGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAGTAAAG 499265 Query 77033 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATT 77092 | || || | ||||| || ||||||||| | ||||| || || | ||||| Sbjct 499264 TAACCCTCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGTCACCGCCGTGAATG 499205 Query 77093 CCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTC 77152 || | |||||||||||| ||||||||||| || || || ||| | || || || || Sbjct 499204 CCAATAGCGACACGCATTAACATATGCTGTGGCCGCTCCACAATTTTGCCGTTAATCTTT 499145 Query 77153 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCG 77212 || || || ||| ||| ||||||||||| |||||| | || || ||| || | || Sbjct 499144 AATAAATAAGATCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAATTAAAATCGCGATCA 499085 Query 77213 TAAATAATAACCGAATTTAGT 77233 |||||||| | ||||| ||| Sbjct 499084 CAAATAATAGCAGAATTCAGT 499064 >seq512 Length=181763 Score = 288 bits (318), Expect = 1e-72 Identities = 491/706 (70%), Gaps = 17/706 (2%) Strand=Plus/Minus Query 46464 ATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGAC 46523 ||| ||||| |||||||||| | ||| |||| | ||||| || || | | ||| Sbjct 52825 ATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCATGCCAATTAAGTCGAC 52766 Query 46524 CGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCGATGT 46583 |||| || || || | |||||||| |||||| | || ||||| | ||||||| Sbjct 52765 TGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGGCATCTGTTATTATCTCCAA 52706 Query 46584 TACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATCACA 46643 | ||| | ||| ||| || || ||||||||||||||||| ||||| ||||| Sbjct 52705 AATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACATTAATACCGCAAATTCACA 52646 Query 46644 ATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCC 46703 || | ||||||||| | || | ||| ||||| ||||| | || ||||||| ||| Sbjct 52645 GTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGAATGTTAAACCTGGCATTATTCC 52586 Query 46704 ACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGC 46763 ||| || || ||||||||||| | ||||| ||| |||||| || ||||| || || Sbjct 52585 ACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACTAAAGAAAATACCTTCGACGGC 52526 Query 46764 CGCGAATGC---GACAAGTCTCTCTCCGTAACTGGCATCATT--ATGA-ATCCACCTTTG 46817 ||||| || |||| || || || || | || || |||| ||||| | | Sbjct 52525 AGCGAAAGCTATGACACGT---TCACCAAAATTAGCTGAATGCGATGATATCCATGCTAG 52469 Query 46818 AGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGt- 46876 |||||| || ||||| ||||| || | |||||||| || ||||||||||| ||| | | Sbjct 52468 AGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATAGCATTAAATAGATATTC 52409 Query 46877 ---ttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAAT 46933 || |||| ||| || | | |||||| || || | | |||||||||||| || | Sbjct 52408 ACGTTCTTTC-TCA---TCCATGATATATGTTTCGATAAGTAAACTATACATTTCCGAGT 52353 Query 46934 GAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCT 46993 | | ||||| || || || ||||| || ||||| || | |||||||| || || |||| Sbjct 52352 GCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCAGTTATTTGAACCT 52293 Query 46994 CTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATG 47053 || |||||||||| ||||||||||| || || ||||| || |||||||| | Sbjct 52292 CTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAG 52233 Query 47054 CCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATAT 47113 |||| |||||| |||||||| ||| || | | | |||||| || | || | Sbjct 52232 CCAAGACATGTGAAATAAAATGACGTTCGCCGTCACTTAACCGATTCCAATCGTCCATGT 52173 Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 |||| || | || || |||||||| ||||| || || || || || Sbjct 52172 CTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTCCGC 52127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712919018440320