Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq162 484 9e-132
seq512 288 1e-72
>seq162
Length=626193
Score = 484 bits (536), Expect = 9e-132
Identities = 1247/1881 (66%), Gaps = 24/1881 (1%)
Strand=Plus/Minus
Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427
||||| | || ||||| |||||| | |||||| || || | ||| || ||||||||
Sbjct 500935 TTATCGACTGTAAACTGTATGGGATTTGCTGCTGGCTTCGTTCTTAGGTAATACATACCG 500876
Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487
||||||| || | |||| || || ||||| || | || |||| |||||| ||
Sbjct 500875 GTTTTTAAGCCGACTTTCCAACCATAAAAATGTATAGAAGATAATTTGCCATAACTAGGT 500816
Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547
| |||| ||| || || | || || ||||| ||||| |||||||| | |||| | |||
Sbjct 500815 TGAGCTACATGTATGTTAAATGATTGGCTTTGGTCGATAAAAGCTCCGCGATCAACAGCC 500756
Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 75607
|| || || | | ||| | ||||||||||| ||||| | | || ||| ||
Sbjct 500755 ATGTTGATGGTTGACTTCACCGAAATTTCCCAAACCGTTTTATACAATTCTTTTATGCTT 500696
Query 75608 TCTGGAA--GATTTG-TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATC 75664
|| || | | || | | ||||| || || || | || | | ||| || || ||
Sbjct 500695 TCAGGTATGGCTTCGATGTTTTGTATTGAGCCCCGATGTGCCAATATTAAGTTTTTCATG 500636
Query 75665 TCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGA 75724
| ||||||||| | || || ||| || |||| | |||| |||| || | |
Sbjct 500635 TTATCATTCCAAAGGCCCAATTCAGTCAAATCTTTAAGCAAATGATGATTGACTACGATA 500576
Query 75725 AATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCA 75784
|| || ||||||| ||| | ||| |||| |||||| || ||||| || | ||| |||
Sbjct 500575 AACTCACCAGACAGTACGCGTCGTGTGTGAATATTTGAAGTGTATGGCTCAAAAGACTCA 500516
Query 75785 TTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTT 75844
||||| || | |||||||||||| || || || ||||| || || || | || |||
Sbjct 500515 TTGTTACCAAGAATTTGAGCAGTAGACGCCGTAGGCATTGGAGCTACTAGCAAGGAATTG 500456
Query 75845 CTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGT 75904
| | |||| || | || | ||| |||| ||||| ||| ||||| | ||
Sbjct 500455 CGCACTCCATAACTTTTAATGTCGCTTTTAAGATCCGACCAATTCCATAGATCAGTAGGC 500396
Query 75905 ACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTT 75964
|||||| | ||| ||||| || || | || ||| | || | |||||||
Sbjct 500395 GTTTTATCCCACATATCATATTGAAGGATAGCTTTACTAACTGGACTACCTTCATATGTT 500336
Query 75965 TCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATT 76024
||||| | | || | || || | ||| ||||| | ||||| |||||||||| |||
Sbjct 500335 TCGTACGGACTGTATTGTTTGGCCAATTCACAACTACCTTCTAAGTCACCGTAATATATT 500276
Query 76025 GTTTCGAAAATCTTCTTATTAAGATCTTGC-GCTTCAAGACTATCAAAAGGATAATGTAA 76083
||||| ||||| | ||||| | | | || || | || ||| | || ||| | |
Sbjct 500275 GTTTCAAAAATTTGTTTATTTA-AGCGAGCAGCATTTTCGCTTTCATAGGGGTAACGCAT 500217
Query 76084 AAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATT 76143
| ||| | ||| || || | ||| || || || | |||||| || | ||| | |||
Sbjct 500216 TAAAATCAGTGCGTCAGCAAATCCTTGGACGCCTAAACCAATTGGACGATGACGAAAATT 500157
Query 76144 GGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATT-TC 76202
|| || | ||| || | || || ||||| ||||| || ||||| ||||| || |
Sbjct 500156 AGACTTTCTGGTTTCCGGCAACGGATAGTAATTGATATCGATTATTTTGTTGAGGTTCTT 500097
Query 76203 TGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCTATC---A 76259
|| | |||| | || || || |||||| |||||||| ||| | |||| || |
Sbjct 500096 TGTTATAAGCTTT-GCAACTTCTTTGAGTTTGTGAAAATCATATTGTTTATCTGTCGTTA 500038
Query 76260 CAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCAT 76319
|||||||||| | || || ||||||| ||| ||||| |||| || | ||| | ||
Sbjct 500037 CAAACATATTCAACGCAATTGATGCTAAATTGCAAACTGCTATTTCTTCAGCCGACGTAT 499978
Query 76320 ATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGC 76379
||| | || || || || | ||||| || || ||||| |||| ||| ||||| || |
Sbjct 499977 ATTCGACGATTTCTGTACACAAGTTACTGCATTTTATAGTGCCAACATTCTGTTGATTAC 499918
Query 76380 TCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTG-AT 76438
| || ||||| | || || ||||| | | |||||||| || || | || | |
Sbjct 499917 TTTTGCGATTACAAGCATCTTTGTAAAGCATGTAAGGAGTTCCGGTCTCTACTTGGGCAC 499858
Query 76439 TCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATCGCTT----CTC 76494
| || || | | | | | | |||||||||| | ||||| |||||| |||
Sbjct 499857 TGCAT-ATTGCGAACTACTAGTCACGAGCTTTTATT---GTTTTGT-TCGCTTTGCCCTC 499803
Query 76495 TCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGG 76554
|||||||| | ||||| | ||||||| ||||| ||| ||| ||| |||||
Sbjct 499802 GTCTTCATATTTCATGTATAATCTATCAAATTTGTCTCCATAAATTTCACACAAGCCAGG 499743
Query 76555 ACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAG 76614
|||| || |||||||| | ||||| | |||| ||| ||| | |||||| || |
Sbjct 499742 GCATTTATGGGGACACATTAGAGACCAATGCTCATCAGCCTCAACTCTTTTCATGAACAA 499683
Query 76615 ATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATT 76674
||| || ||||| |||||| ||||| ||| || | | ||| || ||||| |||||
Sbjct 499682 ATCGGGGATCCACAGAGCATAAAATAAATCCCGTGCACGGTCTTCCTCCTTTCCCGTATT 499623
Query 76675 CTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCAT 76734
|||||| | | ||| || || | |||||| | |||||| || |||| ||||| || |
Sbjct 499622 CTTTTTCAAGTTTAGAAATTCGAAAATATCTGCATGCCAAGGCTCTAAGTATATAGCAAA 499563
Query 76735 AACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCT 76794
| | ||||| ||||| ||| || || || | ||| | |||| || || | | |
Sbjct 499562 AGCCCCCGGACGTTTTCCACCACCTTGGTCGACATAACGGGCAACATTGTTGAACAGACG 499503
Query 76795 CAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGC 76854
||||| |||| || |||| |||| || | | ||||| || | | | || | |||
Sbjct 499502 TAACATAGGAACAAGACCGTCAGATACTTCACTATTACCAGATATCTTAGTCCCTCTTGC 499443
Query 76855 ACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACA-GC 76913
|| || | |||| ||| |||||||| || ||| ||||| ||| ||||||
Sbjct 499442 TCGTATGCAATGAATATTTAGACCTATTCCACCGGCCGCCTTAGAAATTTTAGCACATTG 499383
Query 76914 GTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGAAGAAAACAG 76972
|| | | ||||| || || || || || ||| ||| |||| ||| | |||
Sbjct 499382 GTCTATAGCCTTCATA-ATACCATCAATGGAGTCTTCCGGCATAGTTAGCAAG-ACGCAG 499325
Query 76973 CTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAAC 77032
|||| ||| | | | || | ||| ||| || || || || |||||||| ||
Sbjct 499324 GACGACAATTGCGGGCGTATGGTAGCAGCACCAAATAAAGTTGGGGAAGCATGAGTAAAG 499265
Query 77033 CATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATT 77092
| || || | ||||| || ||||||||| | ||||| || || | |||||
Sbjct 499264 TAACCCTCCGACATGAGATTATAAGTTTCAATAGCCGCTTCAATGTCACCGCCGTGAATG 499205
Query 77093 CCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTC 77152
|| | |||||||||||| ||||||||||| || || || ||| | || || || ||
Sbjct 499204 CCAATAGCGACACGCATTAACATATGCTGTGGCCGCTCCACAATTTTGCCGTTAATCTTT 499145
Query 77153 AACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCG 77212
|| || || ||| ||| ||||||||||| |||||| | || || ||| || | ||
Sbjct 499144 AATAAATAAGATCGTTCTAAAGTTTTAAAGCCAAAAAAATTATAATTAAAATCGCGATCA 499085
Query 77213 TAAATAATAACCGAATTTAGT 77233
|||||||| | ||||| |||
Sbjct 499084 CAAATAATAGCAGAATTCAGT 499064
>seq512
Length=181763
Score = 288 bits (318), Expect = 1e-72
Identities = 491/706 (70%), Gaps = 17/706 (2%)
Strand=Plus/Minus
Query 46464 ATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAGTTTGAC 46523
||| ||||| |||||||||| | ||| |||| | ||||| || || | | |||
Sbjct 52825 ATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCATGCCAATTAAGTCGAC 52766
Query 46524 CGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTATCGATGT 46583
|||| || || || | |||||||| |||||| | || ||||| | |||||||
Sbjct 52765 TGGTAAGGCTTCTGTCAAAAACTCTTTTTCAATTTTCACGGCATCTGTTATTATCTCCAA 52706
Query 46584 TACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAAATCACA 46643
| ||| | ||| ||| || || ||||||||||||||||| ||||| |||||
Sbjct 52705 AATCCGTTCTTTACTCGGTTTTTGTATTAAATGTTTAAACATTAATACCGCAAATTCACA 52646
Query 46644 ATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCC 46703
|| | ||||||||| | || | ||| ||||| ||||| | || ||||||| |||
Sbjct 52645 GTGTAAGCCTTCATCGCGTGATATCATTTCATTAGAGAATGTTAAACCTGGCATTATTCC 52586
Query 46704 ACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGC 46763
||| || || ||||||||||| | ||||| ||| |||||| || ||||| || ||
Sbjct 52585 ACGTTTCTTTAGCCAAAATATCGATGCGAAGCTGCCACTAAAGAAAATACCTTCGACGGC 52526
Query 46764 CGCGAATGC---GACAAGTCTCTCTCCGTAACTGGCATCATT--ATGA-ATCCACCTTTG 46817
||||| || |||| || || || || | || || |||| ||||| | |
Sbjct 52525 AGCGAAAGCTATGACACGT---TCACCAAAATTAGCTGAATGCGATGATATCCATGCTAG 52469
Query 46818 AGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGt- 46876
|||||| || ||||| ||||| || | |||||||| || ||||||||||| ||| | |
Sbjct 52468 AGCCCATTCCGCCTTCTTCTTAACCAATGGCATTGTCTCAATAGCATTAAATAGATATTC 52409
Query 46877 ---ttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAAT 46933
|| |||| ||| || | | |||||| || || | | |||||||||||| || |
Sbjct 52408 ACGTTCTTTC-TCA---TCCATGATATATGTTTCGATAAGTAAACTATACATTTCCGAGT 52353
Query 46934 GAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCT 46993
| | ||||| || || || ||||| || ||||| || | |||||||| || || ||||
Sbjct 52352 GCACATTTTCCATGGCAATTTGAAAACCATAAAAGCAACGAGCTTCAGTTATTTGAACCT 52293
Query 46994 CTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATG 47053
|| |||||||||| ||||||||||| || || ||||| || |||||||| |
Sbjct 52292 CTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAG 52233
Query 47054 CCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATAT 47113
|||| |||||| |||||||| ||| || | | | |||||| || | || |
Sbjct 52232 CCAAGACATGTGAAATAAAATGACGTTCGCCGTCACTTAACCGATTCCAATCGTCCATGT 52173
Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159
|||| || | || || |||||||| ||||| || || || || ||
Sbjct 52172 CTTTAGAGAGGTCAACCTCTTCAGCAGTCCAAAAAGAGGCTTCCGC 52127
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712919018440320
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