Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq1190 361 4e-95 seq367 143 2e-29 seq748 140 2e-28 seq985 87.8 1e-12 >seq1190 Length=30524 Score = 361 bits (400), Expect = 4e-95 Identities = 735/1075 (68%), Gaps = 30/1075 (3%) Strand=Plus/Minus Query 64055 GGCTTTGTTGAATAAATCAGATTT--CGG---GTAAGTCTCCCCCGTAGCGGGTTGTGTT 64109 ||||||||||||||||||||| | ||| | | | ||||| || ||| | Sbjct 24583 GGCTTTGTTGAATAAATCAGAGGTAGCGGACAGGATGACTCCC-----GCCGGTACTCCC 24529 Query 64110 TTCAGGCAATACGCACGCTTTCAGGCATACCTGCTTTCGTCATTTTGTTCAGCGCTCGTA 64169 | | ||||| || | ||| | ||||| || |||||| ||||||||| | Sbjct 24528 ATTATGCAATGCGAATGCTGTTCGGCATGCCCAGCAGCGTCATGCGGTTCAGCGCCTTAA 24469 Query 64170 CCAGGGCCATAGCCTCCGCAACCTGACCATCGTAGTCACGCAGCGTCAGTGAACCCCCGA 64229 ||| ||||| ||||| | ||||| | || ||||| ||||| |||| ||| || | Sbjct 24468 CCATTGCCATCGCCTCACCTACCTGTGCGTCATAGTCTCGCAGGCTCAGATGACCGCCCA 24409 Query 64230 ACAGCTGTTTTACCCGGTACATCGCCGTTTCCGCTATCGAGCGACGGTTGTAATCTGTTG 64289 || ||| | ||| ||||||||||||| || | || || |||| ||| ||||| Sbjct 24408 GCAAGGTTTTGATGCGGAACATCGCCGTTTCAGCCACTGAACGCCGGTGATAACCTGTTT 24349 Query 64290 TCCATTTCCACCGCGCATTACTCCCGGTCATTCGCTGATTAGCCACTGCACGGTTACGGT 64349 | ||||| |||| | ||| ||| |||||| ||||| ||| |||| || | Sbjct 24348 TTTTCTTCCAGACGTCATTGTTACCGCTCAGATACTGATTCGCCACGGCATGGTTGCGTT 24289 Query 64350 CTGCATATTCACCGGGCCAGTAACCCGCACCTTTTCGGGGCGGGATAAGCGCGCTGATTT 64409 | |||| ||||||| || ||||||||| || |||||||||| ||||||| Sbjct 24288 CATGGTATTTGTCGGGCCAATACTGTCCACCTTTTCTCGGTGGGATAAGCGGCCTGATTT 24229 Query 64410 TCTTACGCCGCAGTTCATCGTGACAGAGCCGGGTATCGTAAGCTCCATCGGCGGCGGCTG 64469 | || | | |||| |||| || ||| ||||||||||||||| |||| || | ||| Sbjct 24228 TTTTCCTCAGCAGAGCATCATGGCAGTAACGGGTATCGTAAGCTACATCTGCCGACGCTT 24169 Query 64470 ACCTGATTTTCCGGTGGGTTTGCCGGATTAACCCGGGGAAGGCCTCTGAGTCCGTAACGT 64529 || ||||||||||||||| || || | ||| || | |||| | || || ||| Sbjct 24168 CCCGGATTTTCCGGTGGGTCTGGTTAATCAGCCCCGGCAGTGCCTGCGCATCGGT--CGT 24111 Query 64530 T--GTTCAGCGACAGGTCAGCGCAGATGATTTCATGTGTTTTACTGTCAACTGCCAGATG 64587 | | | ||||| | || |||||||| |||||||| ||| |||||| | |||| ||| Sbjct 24110 TCCGCTGAGCGATAAATCGGCGCAGATAATTTCATGCGTTGCACTGTCTGCGGCCACATG 24051 Query 64588 CAGCTTACGCCATATACGACGGCGTTCCTGGCCATGCTTTTTGACTTTCCACTCGCCTTC 64647 ||||||||||| | | || | || ||||| | |||||||||| || ||||| Sbjct 24050 AAGCTTACGCCACACTCTGCGCCTGTCGGCCCCATGTTGCCTGACTTTCCATTCACCTTC 23991 Query 64648 ACCGAAGACCTTCAGCCCGGTGGAATCAATTACCAGGTGTGCGATTTCACCCCGGGTGGG 64707 |||||||| ||||| || ||| ||||| ||||| |||| ||||| ||| ||||| || Sbjct 23990 GCCGAAGACTTTCAGGCCAGTGCTGTCAATGACCAGATGTGAGATTTTACCACGGGTTGG 23931 Query 64708 CGTTTTGAAACTGATATTAACCGACTTTGCCCGCCTGCTGACACAGCT-GTAATCCGGGC 64766 ||| || | ||||| ||||| | |||||| || |||||||| ||| ||||||||||| Sbjct 23930 CGTCTTTATGCTGATTTTAACGGTCTTTGCTCGTCTGCTGAC-CAGAGAGTAATCCGGGC 23872 Query 64767 AGCGTAGCGGAACGTTCATCAGAGAAAAAATGGAATCAATAAAGCCCTGCGCAGCGCGCA 64826 || | || | |||||| |||||| | |||| |||||||| || || | Sbjct 23871 AGAACAACGACAGCCCCATCAGCTTAAAAATCAAGTCAACGAAGCCCTGTAATGCCCGAA 23812 Query 64827 GGGTCAGCCTGAATACGCGTTTAATGACCAGCACAGTCGTGATGGCAAGGTCAGAATAGC 64886 | | ||| | || || || || || | ||| ||||| ||||| || | || | |||| Sbjct 23811 GCGACAGGTTAAACACTCGCTTCATCATCAGAACAGTGGTGATAGCCATATCGGTATAGT 23752 Query 64887 GCTGAGGTCTGCCTCGTGAAGAAGGTGTTGCTGACTCATACCAGGCCTGAATAGCTTCAT 64946 | | ||| ||| || || ||| ||| ||| || || ||| | Sbjct 23751 GGAGCAGTCGGCCACGACCTTCTGGCTGTGCACTGTCAGTCCATGCAGCAACGGCTGACT 23692 Query 64947 CATCCAGCCAGAAAGTTATGGAGCCACG-GTTG-ATGAGGGCTTTATTGTAGGTGGGCCA 65004 |||| ||||| | || | ||||| || | || |||| ||||| ||||| | ||||| Sbjct 23691 CATCAAGCCATACCGTGA--GAGCCCCGCGCTGCCTGAGTGCTTTGTTGTATGCAGGCCA 23634 Query 65005 GTTGGTGATTTTGAACTTTTGCTTTGCCACGGAACGGTCTGCGTTGTCGGGAAGA---TA 65061 |||||||||||| |||||||||||||||| | || | || || | | || || Sbjct 23633 GTTGGTGATTTTAAACTTTTGCTTTGCCA---TAGGGAC-CCGATGATGAAACGACTGTA 23578 Query 65062 CGTGATCTGATCCTTCAACTCAGC-AAAAGTTCGATTTATTCAACAAAACCAGTT 65115 | ||| ||||| ||| ||| | ||||||||||||||||||||||| ||| || Sbjct 23577 -GATATCAGATCCCCCAA-TCACCTAAAAGTTCGATTTATTCAACAAAGCCACTT 23525 >seq367 Length=84945 Score = 143 bits (158), Expect = 2e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 64535 AGCGACAGGTCAGCGCAGATGATTTCATGTGTTTTACTGTCAACTGCCAGATGCAGCTTA 64594 ||||| | |||||| ||||| || ||||| ||| |||||| || | |||||||||| Sbjct 84929 AGCGATAAGTCAGCACAGATAATCTCATGCGTTACACTGTCTGTGGCTATATGCAGCTTA 84870 Query 64595 CGCCATATACGACGGCGTTCCTGGCCATGCTTTTTGACTTTCCACTCGCCTTCACCGAAG 64654 ||||| | | || | || ||||||| | | ||||||| |||||||| || ||| Sbjct 84869 CGCCACACCCTCCGTCTGTCGGCACCATGCTGTCGGGCTTTCCATTCGCCTTCGCCAAAG 84810 Query 64655 ACCTTCAGCCCGGTGGAATCAATTACCAGGTGTGCGATTTCACCCCGGGTGGGCGTTTTG 64714 |||||||| ||||| ||||| || || ||| ||||||||| ||||| |||||||| Sbjct 84809 ACCTTCAGGCCGGTTCCGTCAATGACTAGAGGTGAGATTTCACCACGGGTCGGCGTTTTT 84750 Query 64715 AAACTGATATTAACCGACTTTGCCCGCCTGCTGA 64748 | ||||| ||||| | ||||| ||| |||||| Sbjct 84749 ATGCTGATCTTAACTGTCTTTGTTCGCTTGCTGA 84716 Score = 82.4 bits (90), Expect = 5e-11 Identities = 136/186 (73%), Gaps = 13/186 (7%) Strand=Plus/Minus Query 18027 AACCATAGTTACGGCCTC----GTAAGTTGATAAACAACCT-GCGACCCGCTGCTAAACA 18081 ||||||||| ||||||| || ||| | | ||||| || || ||| ||||||| Sbjct 5290 AACCATAGTGGCGGCCTCCTTCGTGGGTTCTTTCA-AACCTCGCTCCCTGCTTCTAAACA 5232 Query 18082 -GGTGGCAGGACGTGACGGGGTTAGCAGACTGGCACTTACGAAACCAGCAGGCCGAA-GC 18139 |||||| ||||| ||||| |||| |||| ||| | ||| || || ||| | Sbjct 5231 AGGTGGCGAGACGTAACGGGATTAGAAGACCGGCCACGAAGAACCCGGCGAGCCTTTCGG 5172 Query 18140 CTCCCCATC-ACGCCCCACCATAATTC--GGGCGTAACGT-GGTTTA-CGGACACAAAAA 18194 |||||| | ||| |||||||||||| ||||| ||||| |||||| |||||||||||| Sbjct 5171 CTCCCCCGCTACGTCCCACCATAATTTAGGGGCGCAACGTTGGTTTAACGGACACAAAAA 5112 Query 18195 TACCGC 18200 ||||| Sbjct 5111 AACCGC 5106 >seq748 Length=7821 Score = 140 bits (154), Expect = 2e-28 Identities = 466/719 (65%), Gaps = 16/719 (2%) Strand=Plus/Minus Query 96700 ATAGTTATCAAACCGTGAGTATTGGCCGTTAAAAGCCAATCTCACCGTGCCAATTGGGCC 96759 ||| |||||||| | || || || ||||||| | | | || || || || || Sbjct 6854 ATAATTATCAAATCTAGACCATCTTCCATTAAAAGTTAGACGAATTGTTCCTATCGGACC 6795 Query 96760 ATTTCGTTGCTTTCCGATAATTACCTCGGCAATGCCCTTCATTTCGCTATCCGGGTGATA 96819 ||| ||||| ||||| | ||| | || || || || || | || || | ||| Sbjct 6794 ATTACGTTGTTTTCCTAAAATAATTTCTGCTATTCCTTTTAACTCTTGATTTTCATTATA 6735 Query 96820 AACTTCGTCGCGATACAAAAACATGATCAGGTCTGCGTCCTGCTCAATTGCTCCTGATTC 96879 ||||| || ||||| | |||||| || | ||||| || || || || | ||| ||||| Sbjct 6734 TACTTCATCTCGATAAATAAACATAATTACATCTGCATCTTGTTCGATCGATCCAGATTC 6675 Query 96880 ACGTAAATCTGAATTTACCGGTCGTTTGTCCGCACGCTGTTC-AAGCGATCGATTAAGTT 96938 | |||||||||||| | ||||| ||| || | ||||| || || | | |||||||||| Sbjct 6674 CCTTAAATCTGAATTGATCGGTCTTTTATCTGATCGCTGCTCTAAACTA-CGATTAAGTT 6616 Query 96939 GTGACAATGCCACCACCGGTACTTGTAATTCCTTCGCCAACGCCTTCAGTGAGCGAGAAA 96998 |||| ||||| | || || ||||| | ||| || || || || || | || | || | Sbjct 6615 GTGATAATGCAATAACAGGAACTTGAAGTTCTTTTGCTAATGCTTTTAAAGATCTTGATA 6556 Query 96999 TCTCGGCAATTTCCAGCGTTCGGTTATCTTGCAGCTCCGGGACGCGCATAAGTTGCAGGT 97058 | || |||||||| || |||| |||| | || | |||||||||| | || Sbjct 6555 TTTCTGCAATTTCTAGTGTTCTATTATTAAATATTGTAGGAGCATGCATAAGTTGTAAGT 6496 Query 97059 AGTCGATCATAATCATGCTCAAACCACCATTTTCTTTATAAACACGACGAGCGCGGGAAC 97118 | || |||||||| | || || || || ||| | ||| || | | | ||| | Sbjct 6495 AATCAATCATAATTAAACTTAATCCTGAATGTTCACGAAAAATTCGTCTTGATCTGGATC 6436 Query 97119 GTAGCTCTGTCGGCGTCAGGGCGCTT----GAGTCATCAATAAAAATATTCTGCTTGTCC 97174 | | ||||| || | ||| || |||||||| | || |||| || | Sbjct 6435 GGATTTCTGTTACTGTTA----ACTTAGAAGAATCATCAATGTAGATGTTCTTTTTTTTT 6380 Query 97175 AACAGAATACCCATTGCGCCA---GAAACCCGCGCCCAATCCTCGTCGTTAAGTTGCCCT 97231 | | ||| |||| | || | || | |||||| || | | ||||| || Sbjct 6379 A--ATAAT-GTTTGTGCGGTATTTGATATGCGTGACCAATCTTCTTTTGTTAGTTGACCA 6323 Query 97232 GTTCGAATACGAGTCTGATCAACGCGTGCAAGAGAAGCCAGTGAGCGCATCATCAGCTGG 97291 |||| | ||| | ||||| || | || | ||| | ||| |||||||| | || Sbjct 6322 GTTCTCAGTCGACTTTGATCTACTCTTGACAAAGACGAAAGTATACGCATCATAATTTGT 6263 Query 97292 TGGCTCGGCATCTCAAGGCTAAAAACCAATACGGGCTTATCGTTACGAACTGCGGCATTT 97351 | | | ||| || || ||||||| || ||||||||||| | | | ||| |||| | Sbjct 6262 TCACCTGACATTTCTAGACTAAAAATTAAAACGGGCTTATCTTCGTGTATTGCAGCATAT 6203 Query 97352 TCGACGAGATTCATCGCAAACGTGGTCTTCCCCATAGATGGGCGGGCGGCGACAATGAT 97410 ||| | ||| || ||||| || || || |||||||| || || || || | ||| || Sbjct 6202 TCGCATAAATTAATAGCAAAAGTTGTTTTTCCCATAGAAGGTCGAGCCGCAATAATAAT 6144 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 44805 CCTTCGATGTAGACCTGAGAACCTTTTCGTAAATACTCACTCGCAATTTCAGCAAGTTTT 44864 ||||| || || || ||||| |||||||||||||| || | || ||||| || | |||| Sbjct 7191 CCTTCAATATATACTTGAGAGCCTTTTCGTAAATATTCTCCGGCTATTTCTGCTAATTTT 7132 Query 44865 CCGAACAAAACGACTTTATGCCATTCTGTTTGCTCTTTCTGTTGGCCCGTTTGCTTGTCG 44924 || || ||||| | | | |||||||| |||| |||||| | || || | ||||| Sbjct 7131 CCAAATAAAACTATTCTGTGCCATTCAGTTTTTTCTTTCATGTCTCCGGTATTTTTGTCA 7072 Query 44925 CGCCATGATTCATTCGTTGCGATGCTGAGTCTTC-CGACCGCTCCGCCATTTGGTATATA 44983 ||||| ||| || || | ||| | ||| | || || | || || |||||||| Sbjct 7071 CGCCAGCTCTCAGATGTAGCAAGCGTGA-TATTCGCAACAGCACTTCCGTTAGGTATATA 7013 Query 44984 CCTGATCTCCGGGTCTTGCCCCAGGGTACCAATCAGGATGACTTTGTTTACACC 45037 | || || || | |||||| | ||||| | || ||||| |||||||| Sbjct 7012 ACGTATATCTGGATTTTGCCCTAAATGTCCAATTAAAATTACTTTATTTACACC 6959 >seq985 Length=1952 Score = 87.8 bits (96), Expect = 1e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 98319 TGGCCCCTACCGGACTTGAACCGGTGACCGTGCGATTATGAGTCGCCAGCTCTAACCACT 98378 |||||| | | ||| ||||||| | |||| |||||||||||||||| ||||| |||||| Sbjct 1824 TGGCCCTTGCTGGATTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTTACCACT 1765 Query 98379 GAGCTAAAGGGCC 98391 ||||||||||||| Sbjct 1764 GAGCTAAAGGGCC 1752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330892239328516