Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq116 104 5e-17
seq2 104 5e-17
>seq116
Length=862150
Score = 104 bits (114), Expect = 5e-17
Identities = 149/209 (71%), Gaps = 1/209 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| ||||||||||| || ||||| ||||||||||| | || || | |||||||| |
Sbjct 484292 CAAG-TGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCA 484234
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
||| || || ||||| | | ||||||||| | | || |||||||| || || |
Sbjct 484233 ACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGA 484174
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
||||| ||| || | || | ||||||| |||||||| | ||| || ||||| |
Sbjct 484173 TTTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTGATCGTTTTTC 484114
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105
| || | ||| || || || | ||||||
Sbjct 484113 CGGTCAAAGTTTTAACAAATATTTGCATT 484085
Score = 96.9 bits (106), Expect = 8e-15
Identities = 146/208 (70%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960
||| || || || ||||| || |||||||| |||| | || | |||| ||| |
Sbjct 481858 ATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTTTCCAACTG 481799
Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020
||| || || ||||| | | || || || | | || |||||| || |||||||||||
Sbjct 481798 TTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGGACTCCTTCTTTATCTTGAATTTT 481739
Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080
||| ||| |||| | |||| || ||| || || | || |||||||| || ||
Sbjct 481738 AGTTTTAACATTCTCAATAGTGTCGGATGGCTCAACCTCCAAGGTGATAGTTTTCCCAGT 481679
Query 152081 GAGAGTCTTCACGAAGACCTGCATTTTA 152108
| ||||||||||||| ||||||||||
Sbjct 481678 CAATGTCTTCACGAAGATCTGCATTTTA 481651
>seq2
Length=5618958
Score = 104 bits (114), Expect = 5e-17
Identities = 143/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967
|| ||||| ||||| ||||| || |||| ||| || | ||||||||| | || ||
Sbjct 3063902 GTCGACTCCTTTTGTATGTTATAGTCGGATAACGTGCGCCCATCTTCCAATTGCTTGCCA 3063961
Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027
||||| || | | || || || | | || ||||| || || |||||||| |||
Sbjct 3063962 GCGAATATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTGAATTTTGGCCTTG 3064021
Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087
||| | || | |||| ||| ||| ||||| | ||||||||||||||| || |||||
Sbjct 3064022 ACATTTTCAATAGTGTCGGAAGGCTCAACTTCCAAAGTAATAGTTTTGCCAGTAAGAGTT 3064081
Query 152088 TTCACGAAGACCTGCATTTT 152107
|| ||||| | ||||||||
Sbjct 3064082 TTAACGAAAATTTGCATTTT 3064101
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153795283974146
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |