Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_031946.1 Length=40443 Score E Sequences producing significant alignments: (Bits) Value seq347 363 4e-96 seq748 120 8e-23 >seq347 Length=3601 Score = 363 bits (402), Expect = 4e-96 Identities = 628/908 (69%), Gaps = 6/908 (1%) Strand=Plus/Minus Query 20894 TATTTAGGCCGCTGTTTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCT 20953 ||| |||| | | ||| ||||| || || |||| ||||||||||| || || | || Sbjct 2866 TATCTAGGTCTGTTTTTTGTTTCAATATATATTCGTCCAATATATTCACCCAGCACCCCG 2807 Query 20954 ATTCCTATCAATTGAACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCA 21013 || || || ||||| || ||||| | || |||| | || | | || || || || Sbjct 2806 ATACCGATTAATTGCACTCCACCAATAAATAGAATGGCTACCATCAATGATGGATAACCT 2747 Query 21014 GGAACATTATTTCCAAATATTAATTTATCAATAATCATCCATGCACCGTAAAGGAATGAC 21073 || || || ||||||| |||||| |||| |||||||| || || || || || Sbjct 2746 GGGACTGGGTTACCAAATAGTAATTTGTCAACCGTCATCCATAGGCCATATAGAAAAGAA 2687 Query 21074 ATACCTGCAATAAACAATCCAATGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAA 21133 | || | | || || || || ||||| || | | || | ||||| ||||| Sbjct 2686 AGTGAAGCGACACCAAAACCGATATACGTCCACATTCTTAAAGGGATAGTTGAAAAAGAT 2627 Query 21134 GTTATTCCCTCCAGCGCCAGGTTCCATAATTTCCAGCCGTTGAATTTCGAATCA-CCGGC 21192 ||||| || || || || | |||||||||||||| | | || || | | | ||||| Sbjct 2626 GTTATCCCTTCAAGAGCTAAATTCCATAATTTCCACCAACTAAACTT-GCTTGATCCGGC 2568 Query 21193 CACGCGTTCGGCACGGGCATATTTAACAACATCCGTTTTTCCGCCAACCCAACTGAGCAC 21252 || || ||||| | ||| |||| | || |||||||| | ||| |||| Sbjct 2567 TGATCGCTCAGCACGAGTGTATGTAACCATTTCTACTTTTCCGCTCATCCATGACAGCAA 2508 Query 21253 ACCCTTCATAAACAAGTTGCGTTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCT 21312 ||| ||||| || | ||| ||||| |||| | || || || || || |||| Sbjct 2507 ACCTTTCATGAAAAGGTTACGTTCAGGCAAACACGTAATATTTTCTACGACTTCACGTGA 2448 Query 21313 CATTAACCGAAAGTCGCCAACATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCAG 21372 || || |||||||| ||||||| |||||| |||||| | |||||||||| ||||| || Sbjct 2447 TATCAAACGAAAGTCACCAACATGTTCTTCAATTTTTTGCGTGCTGATTTTGTTGTGTAG 2388 Query 21373 CTTATAAAACCACTCAGCTGTCTTACGCTTCATGCGCCCGTCAGTTGAGCGGTCTGAGCG 21432 | |||||||| || || || || ||||| | ||| ||||| | ||||| ||| Sbjct 2387 TCTGTAAAACCATTCTGCCGTTTTTCGCTTTAATTTCCCATCAGTCGTACGGTCAATGCG 2328 Query 21433 CTTAGCCAGCACCATATCCGCGCCAGCCTGCCACTTCTCAATGAGATGAGGGATAACTTC 21492 |||||||| || | ||| || || || ||||||||||||| | || || || | | Sbjct 2327 TTTAGCCAGTACAACATCAGCACCTGCTCGCCACTTCTCAATCATCTGTGGTATGATATT 2268 Query 21493 TATCGGATCCTGTAAATCGACATCAATAGGAATGACCGCATCCCCGGTTGCATGGTCGAG 21552 || |||||| | |||||| |||||||| | || | ||||| || || ||||| || | Sbjct 2267 TAACGGATCTTATAAATCTACATCAATGGATATAATTGCATCTCCAGTGGCATGTTCTAA 2208 Query 21553 ACCCGCGAAAAGAGCAGGTTCTTTACCGAAGTTTCGCGTAAA--CGAAAGCGGAATAACG 21610 || |||||||| |||||||||||||| |||||||| ||||| || ||| |||| Sbjct 2207 TCCTGCGAAAAGTGCAGGTTCTTTACCAAAGTTTCGAGTAAAGCTGATAGC--CTTAACC 2150 Query 21611 AGCGGATCAGATGCAGCTATTTTGTTAATTATTGATTCAGTCGCATCTTTACTACCATCA 21670 | ||||||||| ||| | ||||| | ||||| ||| ||||||||||| Sbjct 2149 ATTGGATCAGATATTTCTAATACATTAATCAAGCTCTCAGTATTGTCTGTACTACCATCA 2090 Query 21671 TTAATAAAAACGATCTCAATTTCATATTCTTTTAGCTCATTAAACTCACGTACCGTTTTA 21730 ||||| || || | ||| || | ||||| |||||||| ||| || | ||||| |||| Sbjct 2089 TTAATGAACACTACCTCTATATTATATTGATTTAGCTCTGGAAATTCTCTTACCGATTTA 2030 Query 21731 TAGAAAATCGGTATCGTGTCTTCTTCGTTAAAAACTGGAACGACAAGAGAGATTTTCATC 21790 || ||||||||||| | | |||||| |||||||| || || || | || || ||||| Sbjct 2029 TAAAAAATCGGTATGGATTTTTCTTCATTAAAAACAGGGACAACTAACGAAATCTTCATG 1970 Query 21791 TTATATCC 21798 | ||||| Sbjct 1969 TGTTATCC 1962 >seq748 Length=7821 Score = 120 bits (132), Expect = 8e-23 Identities = 235/346 (68%), Gaps = 1/346 (0%) Strand=Plus/Minus Query 26641 CCAAGCATTTGCATGGTTCCACCAACGCCAACGATGACTTCGGTAGTGAACCGATCCTGT 26700 |||||||||||||| | ||| || || || || | ||| || | | ||| || Sbjct 7287 CCAAGCATTTGCATAGAACCATTAATTCCTACAATAATTTCTGTGATATATTTATCTTGA 7228 Query 26701 CTGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAACCT 26760 | |||| || ||||||||||| ||| |||| | ||||||| ||| || | ||| ||| Sbjct 7227 CCATTTTGGTCTTGCCATTTTCTAGTCTGCAAGCTTCCTTCAATATATACTTGAGAGCCT 7168 Query 26761 TTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACACGGTGCCAC 26820 ||||| | ||| || | ||| |||||||| | ||| || | || | | |||||| Sbjct 7167 TTTCGTAAATATTCTCCGGCTATTTCTGCTAATTTTCCAAATAAAACTATTCTGTGCCAT 7108 Query 26821 TCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCAACT 26880 || || | || || ||||| || | || |||||||| || || ||||||| Sbjct 7107 TCAGTTTTTTCTTTCATGTCTCCGGTATTTTTGTCACGCCAGCTCTCAGATGTAGCAAGC 7048 Query 26881 GTAAGGTTTGCAAATGCCGTTCCTGATGGGTGAATATCTGATTTCTGGATCATGCCCAAG 26940 || | || |||| || |||| | | ||| ||| | || ||||||| ||||| | Sbjct 7047 GTGATATTCGCAACAGCACTTCC-GTTAGGTATATAACGTATATCTGGATTTTGCCCTAA 6989 Query 26941 GCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCATTTAT 26986 | ||||| | || || |||||||| |||||||| | |||| || Sbjct 6988 ATGTCCAATTAAAATTACTTTATTTACACCTCTGCTAGTCATTGAT 6943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129293349916860