Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_031946.1
Length=40443
Score E
Sequences producing significant alignments: (Bits) Value
seq347 363 4e-96
seq748 120 8e-23
>seq347
Length=3601
Score = 363 bits (402), Expect = 4e-96
Identities = 628/908 (69%), Gaps = 6/908 (1%)
Strand=Plus/Minus
Query 20894 TATTTAGGCCGCTGTTTGGTTTCTATGTAAATTCTACCAATATATTCTCCAAGAATACCT 20953
||| |||| | | ||| ||||| || || |||| ||||||||||| || || | ||
Sbjct 2866 TATCTAGGTCTGTTTTTTGTTTCAATATATATTCGTCCAATATATTCACCCAGCACCCCG 2807
Query 20954 ATTCCTATCAATTGAACGCCACCCAGGAAAAGAACAGAAACAAGAAGAGACGGGTAGCCA 21013
|| || || ||||| || ||||| | || |||| | || | | || || || ||
Sbjct 2806 ATACCGATTAATTGCACTCCACCAATAAATAGAATGGCTACCATCAATGATGGATAACCT 2747
Query 21014 GGAACATTATTTCCAAATATTAATTTATCAATAATCATCCATGCACCGTAAAGGAATGAC 21073
|| || || ||||||| |||||| |||| |||||||| || || || || ||
Sbjct 2746 GGGACTGGGTTACCAAATAGTAATTTGTCAACCGTCATCCATAGGCCATATAGAAAAGAA 2687
Query 21074 ATACCTGCAATAAACAATCCAATGTAAGTCCATATGCGGAGCGGAAATGTTGAGAAAGAA 21133
| || | | || || || || ||||| || | | || | ||||| |||||
Sbjct 2686 AGTGAAGCGACACCAAAACCGATATACGTCCACATTCTTAAAGGGATAGTTGAAAAAGAT 2627
Query 21134 GTTATTCCCTCCAGCGCCAGGTTCCATAATTTCCAGCCGTTGAATTTCGAATCA-CCGGC 21192
||||| || || || || | |||||||||||||| | | || || | | | |||||
Sbjct 2626 GTTATCCCTTCAAGAGCTAAATTCCATAATTTCCACCAACTAAACTT-GCTTGATCCGGC 2568
Query 21193 CACGCGTTCGGCACGGGCATATTTAACAACATCCGTTTTTCCGCCAACCCAACTGAGCAC 21252
|| || ||||| | ||| |||| | || |||||||| | ||| ||||
Sbjct 2567 TGATCGCTCAGCACGAGTGTATGTAACCATTTCTACTTTTCCGCTCATCCATGACAGCAA 2508
Query 21253 ACCCTTCATAAACAAGTTGCGTTCTGGCATTTGTTTGATGTTCTCGACAACCGCACGGCT 21312
||| ||||| || | ||| ||||| |||| | || || || || || ||||
Sbjct 2507 ACCTTTCATGAAAAGGTTACGTTCAGGCAAACACGTAATATTTTCTACGACTTCACGTGA 2448
Query 21313 CATTAACCGAAAGTCGCCAACATTTTCTTCGATTTTTGGATTGCTGATTTTATTGTGCAG 21372
|| || |||||||| ||||||| |||||| |||||| | |||||||||| ||||| ||
Sbjct 2447 TATCAAACGAAAGTCACCAACATGTTCTTCAATTTTTTGCGTGCTGATTTTGTTGTGTAG 2388
Query 21373 CTTATAAAACCACTCAGCTGTCTTACGCTTCATGCGCCCGTCAGTTGAGCGGTCTGAGCG 21432
| |||||||| || || || || ||||| | ||| ||||| | ||||| |||
Sbjct 2387 TCTGTAAAACCATTCTGCCGTTTTTCGCTTTAATTTCCCATCAGTCGTACGGTCAATGCG 2328
Query 21433 CTTAGCCAGCACCATATCCGCGCCAGCCTGCCACTTCTCAATGAGATGAGGGATAACTTC 21492
|||||||| || | ||| || || || ||||||||||||| | || || || | |
Sbjct 2327 TTTAGCCAGTACAACATCAGCACCTGCTCGCCACTTCTCAATCATCTGTGGTATGATATT 2268
Query 21493 TATCGGATCCTGTAAATCGACATCAATAGGAATGACCGCATCCCCGGTTGCATGGTCGAG 21552
|| |||||| | |||||| |||||||| | || | ||||| || || ||||| || |
Sbjct 2267 TAACGGATCTTATAAATCTACATCAATGGATATAATTGCATCTCCAGTGGCATGTTCTAA 2208
Query 21553 ACCCGCGAAAAGAGCAGGTTCTTTACCGAAGTTTCGCGTAAA--CGAAAGCGGAATAACG 21610
|| |||||||| |||||||||||||| |||||||| ||||| || ||| ||||
Sbjct 2207 TCCTGCGAAAAGTGCAGGTTCTTTACCAAAGTTTCGAGTAAAGCTGATAGC--CTTAACC 2150
Query 21611 AGCGGATCAGATGCAGCTATTTTGTTAATTATTGATTCAGTCGCATCTTTACTACCATCA 21670
| ||||||||| ||| | ||||| | ||||| ||| |||||||||||
Sbjct 2149 ATTGGATCAGATATTTCTAATACATTAATCAAGCTCTCAGTATTGTCTGTACTACCATCA 2090
Query 21671 TTAATAAAAACGATCTCAATTTCATATTCTTTTAGCTCATTAAACTCACGTACCGTTTTA 21730
||||| || || | ||| || | ||||| |||||||| ||| || | ||||| ||||
Sbjct 2089 TTAATGAACACTACCTCTATATTATATTGATTTAGCTCTGGAAATTCTCTTACCGATTTA 2030
Query 21731 TAGAAAATCGGTATCGTGTCTTCTTCGTTAAAAACTGGAACGACAAGAGAGATTTTCATC 21790
|| ||||||||||| | | |||||| |||||||| || || || | || || |||||
Sbjct 2029 TAAAAAATCGGTATGGATTTTTCTTCATTAAAAACAGGGACAACTAACGAAATCTTCATG 1970
Query 21791 TTATATCC 21798
| |||||
Sbjct 1969 TGTTATCC 1962
>seq748
Length=7821
Score = 120 bits (132), Expect = 8e-23
Identities = 235/346 (68%), Gaps = 1/346 (0%)
Strand=Plus/Minus
Query 26641 CCAAGCATTTGCATGGTTCCACCAACGCCAACGATGACTTCGGTAGTGAACCGATCCTGT 26700
|||||||||||||| | ||| || || || || | ||| || | | ||| ||
Sbjct 7287 CCAAGCATTTGCATAGAACCATTAATTCCTACAATAATTTCTGTGATATATTTATCTTGA 7228
Query 26701 CTGCTTTGATCCTGCCATTTTCTTGTCCGCAATTTGCCTTCAAGATAAACCTCAGAACCT 26760
| |||| || ||||||||||| ||| |||| | ||||||| ||| || | ||| |||
Sbjct 7227 CCATTTTGGTCTTGCCATTTTCTAGTCTGCAAGCTTCCTTCAATATATACTTGAGAGCCT 7168
Query 26761 TTTCGCAGATACTCGCTGGCAATTTCTGCCAGTTTCCCGCTCATTACCACACGGTGCCAC 26820
||||| | ||| || | ||| |||||||| | ||| || | || | | ||||||
Sbjct 7167 TTTCGTAAATATTCTCCGGCTATTTCTGCTAATTTTCCAAATAAAACTATTCTGTGCCAT 7108
Query 26821 TCCGTCTGCTCCTTTTGCTCTCCAGTTTGCTTATCACGCCATTGTTCTGACGTAGCAACT 26880
|| || | || || ||||| || | || |||||||| || || |||||||
Sbjct 7107 TCAGTTTTTTCTTTCATGTCTCCGGTATTTTTGTCACGCCAGCTCTCAGATGTAGCAAGC 7048
Query 26881 GTAAGGTTTGCAAATGCCGTTCCTGATGGGTGAATATCTGATTTCTGGATCATGCCCAAG 26940
|| | || |||| || |||| | | ||| ||| | || ||||||| ||||| |
Sbjct 7047 GTGATATTCGCAACAGCACTTCC-GTTAGGTATATAACGTATATCTGGATTTTGCCCTAA 6989
Query 26941 GCGACCAATAATGATCACCTTATTTACGCCTCTGCTTGCCATTTAT 26986
| ||||| | || || |||||||| |||||||| | |||| ||
Sbjct 6988 ATGTCCAATTAAAATTACTTTATTTACACCTCTGCTAGTCATTGAT 6943
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 129293349916860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |