Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq116 181 2e-40 seq32 172 1e-37 seq918 149 1e-30 seq2 140 7e-28 seq226 95.1 3e-14 seq58 95.1 3e-14 seq51 95.1 3e-14 seq34 95.1 3e-14 seq14 95.1 3e-14 seq12 95.1 3e-14 seq4 95.1 3e-14 seq66 87.8 4e-12 seq1196 84.2 5e-11 >seq116 Length=862150 Score = 181 bits (200), Expect = 2e-40 Identities = 156/193 (81%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||| |||||||| |||| | ||||||||||| || | ||||| || ||||| Sbjct 484277 TTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAA 484218 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 ||||||||| || ||||| |||||||| |||||||| ||||| |||||||| ||| | Sbjct 484217 GATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTT 484158 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||||||||| || | ||| ||||| | ||||||||| || || |||||||| ||||| Sbjct 484157 TTCGATAGTGTCTGACGGTTCTACTTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTAAC 484098 Query 283088 GAATATCTGCATT 283100 ||||| |||||| Sbjct 484097 AAATATTTGCATT 484085 Score = 143 bits (158), Expect = 6e-29 Identities = 141/182 (77%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || || | |||| ||| || ||| ||| ||||| |||||||| |||| Sbjct 484084 CCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGAC 484025 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||||||||||| || | ||||| || |||||||||||||| || ||||| ||| Sbjct 484024 AATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 483965 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| |||||||| ||||| |||||||| ||| | |||||||| ||||| | ||| || Sbjct 483964 ATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCAACC 483905 Query 283053 TC 283054 || Sbjct 483904 TC 483903 Score = 140 bits (154), Expect = 7e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||||| || | |||| ||| | || |||||| || ||||||||||| | Sbjct 481881 CCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAG 481822 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||||| || | ||||| || |||||||||||||||||||| || || Sbjct 481821 AGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 481762 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 | || || || ||||| || || | ||| || | || |||||||| || | || || Sbjct 481761 ACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAACC 481702 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || | ||||| || || || ||||| ||||| ||||| ||||||||||| Sbjct 481701 TCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTT 481652 Score = 104 bits (114), Expect = 5e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 282953 TTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGAT 283012 ||| || || ||||| ||||||||||| || || |||||||| ||||| ||||| || Sbjct 474251 TTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGAAT 474192 Query 283013 CTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACC 283072 || ||||| || | |||||||| ||||| | ||| ||||| | ||| || || || || Sbjct 474191 TTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTGCC 474132 Query 283073 CGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || || || || || || || |||||||| Sbjct 474131 AGTTAATGTTTTTACAAAGATTTGCATTTT 474102 >seq32 Length=1919080 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| |||| || || || |||||||| ||| ||||||||| || || || || | Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 39252 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | ||||||||||| || | ||| || || || || ||||| ||||| ||||| ||| Sbjct 39253 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 39312 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| ||||| || ||||| |||||||| | |||||||||||||| | |||||| Sbjct 39313 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 39372 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102 || |||||||| ||||| ||||| | || || || || |||||||| || Sbjct 39373 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 39422 >seq918 Length=2603 Score = 149 bits (164), Expect = 1e-30 Identities = 257/366 (70%), Gaps = 12/366 (3%) Strand=Plus/Minus Query 301426 AAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAA 301485 ||| | || || ||||| || || ||||| || || ||||| || | |||||| |||||| Sbjct 1643 AAATTAGATCCTTATATAAATGTAGATCCTGGTACAATGAGTCCAATTCAACACGGAGAA 1584 Query 301486 GTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACG---T 301542 ||||| || || || ||||| || || |||||| | ||||||||||| |||||||| | Sbjct 1583 GTGTTTGTTACAGAAGATGGCGCAGAGACCGATTTAGATCTGGGGCATTACGAACGTTTT 1524 Query 301543 TTCACTTCATTAACCCTTAAGCGTGAAAGTAATTTTACGACTGGCCAAGTTTATTTAAAA 301602 || | ||| | || | | ||| | | || || || || || || |||||| | Sbjct 1523 TTAAATTC-TAAAATGTCA--CGTAACAACAACTTAACTACAGGAAAAATTTATTCTGAT 1467 Query 301603 GTTATCGAAAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCCCCAC 301662 ||| | ||||||| | |||| | ||||| ||| || | ||||| |||| || Sbjct 1466 GTTTTAAGAAATGAAAGAAAAGGATGTTATCTTGGAGCTACTATTCAAGTGATTCCACAT 1407 Query 301663 ATCACCGATGAAATCAAAAGAAGAATTCACATTGCGGCTGAAAA--ATCAGATATACTTA 301720 || || ||||||| |||| | | ||| ||| | ||||| || ||||| ||| Sbjct 1406 ATTACAAATGAAATAAAAAAATGTATTATACGTGCAG--GAAAAGGATTTGATAT-TTTA 1350 Query 301721 TT-GGAGAAATTGGAGGAACGGTCGGAGATATCGAATCGCTTCCTTTTATAGAAGCGATT 301779 || | |||||||||||||| || || ||||| |||||| | || ||| ||||| ||| Sbjct 1349 TTAGTTGAAATTGGAGGAACAGTAGGTGATATTGAATCGTTACCGTTTTTAGAAAGTATT 1290 Query 301780 CGTCAA 301785 || ||| Sbjct 1289 CGGCAA 1284 >seq2 Length=5618958 Score = 140 bits (154), Expect = 7e-28 Identities = 172/235 (73%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || ||||||| || || || || ||||| ||||| ||||| | Sbjct 3063872 CCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGAT 3063931 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | |||||| ||||| || | ||| || || || || |||||||||||||| || ||| Sbjct 3063932 AACGTGCGCCCATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGGA 3063991 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || || || || || || || || || | || |||||||| |||| || ||| Sbjct 3063992 ATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACT 3064051 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATAT 283107 || | ||| || || || || || | ||| |||||||| || |||||||| |||| Sbjct 3064052 TCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTTATAT 3064106 >seq226 Length=429709 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 221335 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 221391 >seq58 Length=1426912 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1181418 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 1181474 >seq51 Length=1544321 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 154948 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 154892 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 155597 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 155541 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 211465 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 211521 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 216179 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 216123 >seq34 Length=1785938 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 157529 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 157473 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 162498 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 162442 Score = 89.7 bits (98), Expect = 1e-12 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 |||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 158821 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 158765 >seq14 Length=2518641 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1996074 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 1996018 >seq12 Length=2667756 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 1301383 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 1301439 >seq4 Length=4242588 Score = 95.1 bits (104), Expect = 3e-14 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Plus Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 2640574 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 2640630 >seq66 Length=1297373 Score = 87.8 bits (96), Expect = 4e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971 ||||| ||||| ||||| | ||||| ||||| || || || || |||||| | ||| Sbjct 241529 TTTTGTATGTTATAGTCCATTAACGTGCAACCATCTTCCAGCTGCTTGCCGGCATAAATC 241470 Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031 ||||| | || | || || || ||||| || || ||||| | ||| | || || Sbjct 241469 AAACGGCGCTGATTTGGTGGGATGCCGTCCTTATCCTGAATCTTGGTTTTAATCGTTTCA 241410 Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091 ||||| || | | |||| | || | ||||| || | ||||| || || || ||||| Sbjct 241409 ATAGTATCGGTCGGTTCGGCATCTAAAGTGAGGGTATGGCCCGTTAACGTTTTCACGAAA 241350 Query 283092 ATCTGCATTTT 283102 ||||||||||| Sbjct 241349 ATCTGCATTTT 241339 >seq1196 Length=24281 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/58 (93%), Gaps = 1/58 (2%) Strand=Plus/Minus Query 168754 TAGTATAGTGGTT-AGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810 ||||||||||||| |||||||| ||||||||||| |||||||||||||| |||||||| Sbjct 11550 TAGTATAGTGGTTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 11493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046716052016804