Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq116 181 2e-40
seq32 172 1e-37
seq918 149 1e-30
seq2 140 7e-28
seq226 95.1 3e-14
seq58 95.1 3e-14
seq51 95.1 3e-14
seq34 95.1 3e-14
seq14 95.1 3e-14
seq12 95.1 3e-14
seq4 95.1 3e-14
seq66 87.8 4e-12
seq1196 84.2 5e-11
>seq116
Length=862150
Score = 181 bits (200), Expect = 2e-40
Identities = 156/193 (81%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967
||| ||||| |||||||| |||| | ||||||||||| || | ||||| || |||||
Sbjct 484277 TTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAA 484218
Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027
||||||||| || ||||| |||||||| |||||||| ||||| |||||||| ||| |
Sbjct 484217 GATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTT 484158
Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087
||||||||||| || | ||| ||||| | ||||||||| || || |||||||| |||||
Sbjct 484157 TTCGATAGTGTCTGACGGTTCTACTTCCAAAGTGATCGTTTTTCCGGTCAAAGTTTTAAC 484098
Query 283088 GAATATCTGCATT 283100
||||| ||||||
Sbjct 484097 AAATATTTGCATT 484085
Score = 143 bits (158), Expect = 6e-29
Identities = 141/182 (77%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| || || || | |||| ||| || ||| ||| ||||| |||||||| ||||
Sbjct 484084 CCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTTGTAATCAGAC 484025
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
| ||||||||||| || | ||||| || |||||||||||||| || ||||| |||
Sbjct 484024 AATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 483965
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
||||| |||||||| ||||| |||||||| ||| | |||||||| ||||| | ||| ||
Sbjct 483964 ATACCTTCCTTGTCCTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGATGATTCAACC 483905
Query 283053 TC 283054
||
Sbjct 483904 TC 483903
Score = 140 bits (154), Expect = 7e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||||| || | |||| ||| | || |||||| || ||||||||||| |
Sbjct 481881 CCACCACGCAAACGTAAAACCAAATGGAGTGTCGATTCTTTCTGAATGTTGTAGTCGGAG 481822
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||||| || | ||||| || |||||||||||||||||||| || ||
Sbjct 481821 AGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAGATCAAACGTTGTTGATCTGGTGGG 481762
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
| || || || ||||| || || | ||| || | || |||||||| || | || ||
Sbjct 481761 ACTCCTTCTTTATCTTGAATTTTAGTTTTAACATTCTCAATAGTGTCGGATGGCTCAACC 481702
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| | ||||| || || || ||||| ||||| ||||| |||||||||||
Sbjct 481701 TCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCACGAAGATCTGCATTTT 481652
Score = 104 bits (114), Expect = 5e-17
Identities = 113/150 (75%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 282953 TTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGAT 283012
||| || || ||||| ||||||||||| || || |||||||| ||||| ||||| ||
Sbjct 474251 TTGCTTGCCAGCAAAAATCAAACGTTGCTGATCTGGGGGAATACCTTCCTTATCTTGAAT 474192
Query 283013 CTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACC 283072
|| ||||| || | |||||||| ||||| | ||| ||||| | ||| || || || ||
Sbjct 474191 TTTAGCTTTAACATTTTCGATAGTATCCGATGGTTCAACTTCCAAAGTAATAGTTTTGCC 474132
Query 283073 CGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| || || || || || || ||||||||
Sbjct 474131 AGTTAATGTTTTTACAAAGATTTGCATTTT 474102
>seq32
Length=1919080
Score = 172 bits (190), Expect = 1e-37
Identities = 176/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| |||| || || || |||||||| ||| ||||||||| || || || || |
Sbjct 39193 CCACCTCGCAAACGCAGCACAAGATGTAAGGTGGATTCTTTTTGAATATTATAATCGGAC 39252
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
| ||||||||||| || | ||| || || || || ||||| ||||| ||||| |||
Sbjct 39253 AATGTGCGGCCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGGA 39312
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| ||||| ||||| || ||||| |||||||| | |||||||||||||| | ||||||
Sbjct 39313 ATTCCCTCTTTGTCCTGAATCTTGGCTTTTACATTTTCGATAGTGTCCGAGGGTTCGACC 39372
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTT 283102
|| |||||||| ||||| ||||| | || || || || |||||||| ||
Sbjct 39373 TCAAGAGTGATGGTCTTGCCCGTTAGGGTTTTTACAAAAATCTGCATATT 39422
>seq918
Length=2603
Score = 149 bits (164), Expect = 1e-30
Identities = 257/366 (70%), Gaps = 12/366 (3%)
Strand=Plus/Minus
Query 301426 AAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACATGGAGAA 301485
||| | || || ||||| || || ||||| || || ||||| || | |||||| ||||||
Sbjct 1643 AAATTAGATCCTTATATAAATGTAGATCCTGGTACAATGAGTCCAATTCAACACGGAGAA 1584
Query 301486 GTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAACG---T 301542
||||| || || || ||||| || || |||||| | ||||||||||| |||||||| |
Sbjct 1583 GTGTTTGTTACAGAAGATGGCGCAGAGACCGATTTAGATCTGGGGCATTACGAACGTTTT 1524
Query 301543 TTCACTTCATTAACCCTTAAGCGTGAAAGTAATTTTACGACTGGCCAAGTTTATTTAAAA 301602
|| | ||| | || | | ||| | | || || || || || || |||||| |
Sbjct 1523 TTAAATTC-TAAAATGTCA--CGTAACAACAACTTAACTACAGGAAAAATTTATTCTGAT 1467
Query 301603 GTTATCGAAAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCCCCAC 301662
||| | ||||||| | |||| | ||||| ||| || | ||||| |||| ||
Sbjct 1466 GTTTTAAGAAATGAAAGAAAAGGATGTTATCTTGGAGCTACTATTCAAGTGATTCCACAT 1407
Query 301663 ATCACCGATGAAATCAAAAGAAGAATTCACATTGCGGCTGAAAA--ATCAGATATACTTA 301720
|| || ||||||| |||| | | ||| ||| | ||||| || ||||| |||
Sbjct 1406 ATTACAAATGAAATAAAAAAATGTATTATACGTGCAG--GAAAAGGATTTGATAT-TTTA 1350
Query 301721 TT-GGAGAAATTGGAGGAACGGTCGGAGATATCGAATCGCTTCCTTTTATAGAAGCGATT 301779
|| | |||||||||||||| || || ||||| |||||| | || ||| ||||| |||
Sbjct 1349 TTAGTTGAAATTGGAGGAACAGTAGGTGATATTGAATCGTTACCGTTTTTAGAAAGTATT 1290
Query 301780 CGTCAA 301785
|| |||
Sbjct 1289 CGGCAA 1284
>seq2
Length=5618958
Score = 140 bits (154), Expect = 7e-28
Identities = 172/235 (73%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || || ||||||| || || || || ||||| ||||| ||||| |
Sbjct 3063872 CCACCACGGAGACGGAGTACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAGTCGGAT 3063931
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
| |||||| ||||| || | ||| || || || || |||||||||||||| || |||
Sbjct 3063932 AACGTGCGCCCATCTTCCAATTGCTTGCCAGCGAATATCAAACGTTGTTGATCTGGAGGA 3063991
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| || || || || || || || || || || | || |||||||| |||| || |||
Sbjct 3063992 ATGCCTTCTTTATCCTGAATTTTGGCCTTGACATTTTCAATAGTGTCGGAAGGCTCAACT 3064051
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTTTCATAT 283107
|| | ||| || || || || || | ||| |||||||| || |||||||| ||||
Sbjct 3064052 TCCAAAGTAATAGTTTTGCCAGTAAGAGTTTTAACGAAAATTTGCATTTTTATAT 3064106
>seq226
Length=429709
Score = 95.1 bits (104), Expect = 3e-14
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 221335 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 221391
>seq58
Length=1426912
Score = 95.1 bits (104), Expect = 3e-14
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1181418 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 1181474
>seq51
Length=1544321
Score = 95.1 bits (104), Expect = 3e-14
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 154948 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 154892
Score = 95.1 bits (104), Expect = 3e-14
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 155597 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 155541
Score = 95.1 bits (104), Expect = 3e-14
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 211465 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 211521
Score = 95.1 bits (104), Expect = 3e-14
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 216179 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 216123
>seq34
Length=1785938
Score = 95.1 bits (104), Expect = 3e-14
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 157529 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 157473
Score = 95.1 bits (104), Expect = 3e-14
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 162498 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 162442
Score = 89.7 bits (98), Expect = 1e-12
Identities = 54/57 (95%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
|||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 158821 TAGTATAGTGGTCAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 158765
>seq14
Length=2518641
Score = 95.1 bits (104), Expect = 3e-14
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1996074 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 1996018
>seq12
Length=2667756
Score = 95.1 bits (104), Expect = 3e-14
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1301383 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 1301439
>seq4
Length=4242588
Score = 95.1 bits (104), Expect = 3e-14
Identities = 55/57 (96%), Gaps = 0/57 (0%)
Strand=Plus/Plus
Query 168754 TAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 2640574 TAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCAATTCCCCG 2640630
>seq66
Length=1297373
Score = 87.8 bits (96), Expect = 4e-12
Identities = 134/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
||||| ||||| ||||| | ||||| ||||| || || || || |||||| | |||
Sbjct 241529 TTTTGTATGTTATAGTCCATTAACGTGCAACCATCTTCCAGCTGCTTGCCGGCATAAATC 241470
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCG 283031
||||| | || | || || || ||||| || || ||||| | ||| | || ||
Sbjct 241469 AAACGGCGCTGATTTGGTGGGATGCCGTCCTTATCCTGAATCTTGGTTTTAATCGTTTCA 241410
Query 283032 ATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAAT 283091
||||| || | | |||| | || | ||||| || | ||||| || || || |||||
Sbjct 241409 ATAGTATCGGTCGGTTCGGCATCTAAAGTGAGGGTATGGCCCGTTAACGTTTTCACGAAA 241350
Query 283092 ATCTGCATTTT 283102
|||||||||||
Sbjct 241349 ATCTGCATTTT 241339
>seq1196
Length=24281
Score = 84.2 bits (92), Expect = 5e-11
Identities = 54/58 (93%), Gaps = 1/58 (2%)
Strand=Plus/Minus
Query 168754 TAGTATAGTGGTT-AGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCG 168810
||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||
Sbjct 11550 TAGTATAGTGGTTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCG 11493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046716052016804
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |