Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12] 1,726 sequences; 357,332,231 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq116 131 1e-25 >seq116 Length=862150 Score = 131 bits (144), Expect = 1e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 44125 CAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTC 44184 |||||||| |||||| || |||||||| ||||||||||| | | | ||| | || Sbjct 484298 CAACACCAAGTGAAGAGTAGATTCCTTTTGTATGTTGTAATCAGACAATGTGCGGCCATC 484239 Query 44185 GTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTC 44244 |||| ||| || || |||||||||||||||||||| |||| ||| | ||||||||| || Sbjct 484238 TTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCTTCCTTGTC 484179 Query 44245 CGTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCG 44303 | || || ||||| || | || | || ||||| | | ||| || |||| || |||| Sbjct 484178 CTGGAT-TTTTGCTTTAACGTTTTCGATAGTGTCTGACGGTTCTACTTCCAAAGTGATCG 484120 Query 44304 TCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| || | || || || || |||||||| Sbjct 484119 TTTTTCCGGTCAAAGTTTTAACAAATATTTGCAT 484086 Score = 111 bits (122), Expect = 1e-19 Identities = 144/195 (74%), Gaps = 3/195 (2%) Strand=Plus/Minus Query 44102 TATTT-CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTT 44160 ||||| |||||| || | || | |||||||| || | ||| |||||||| ||||| Sbjct 484094 TATTTGCATTCCACCGCGGAGACGCAACACCAAATGCAATGTGGATTCCTTTTGTATGTT 484035 Query 44161 GTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTG 44220 |||||| | | | ||| | || |||| ||| || || |||||||||||||||||||| Sbjct 484034 GTAATCAGACAATGTGCGGCCATCTTCCAACTGTTTGCCAGCAAAGATCAAACGCTGCTG 483975 Query 44221 ATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATG-TTCCTATGGTGTCGG 44279 |||| ||| | ||||||||| ||| || || ||||| || | || | || || || | Sbjct 483974 GTCTGGAGGAATACCTTCCTTGTCCTGGAT-TTTTGCTTTAACGTTTTCGATAGTATCCG 483916 Query 44280 CGGATTCCACCTCCA 44294 ||||| ||||||| Sbjct 483915 ATGATTCAACCTCCA 483901 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 || || || |||||||| |||| |||| ||| | | |||| ||| || || |||||| Sbjct 481845 TCTTTCTGAATGTTGTAGTCGGAGAGTGTGCGGCCATTTTCCAACTGTTTGCCAGCAAAG 481786 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||||||| || ||||||| || || |||| |||| | | | || | || || || Sbjct 481785 ATCAAACGTTGTTGATCTGGTGGGACTCCTT-CTTTATCTTGAATTTTAGTTTTAACATT 481727 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || ||||||| | || ||||||| || || || || || || | |||||||| Sbjct 481726 CTCAATAGTGTCGGATGGCTCAACCTCCAAGGTGATAGTTTTCCCAGTCAATGTCTTCAC 481667 Query 44326 GAAGATTTGCAT 44337 |||||| ||||| Sbjct 481666 GAAGATCTGCAT 481655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359982827376942