Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Glossina_20pallidipes_20[genbank_20GCA_5F000688715.1_202014-05-12]
1,726 sequences; 357,332,231 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq32 156 1e-32
seq116 141 2e-28
seq2 111 4e-19
>seq32
Length=1919080
Score = 156 bits (172), Expect = 1e-32
Identities = 158/206 (77%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || ||||| || || || || || ||||| || ||||| ||| ||| |||
Sbjct 39416 CAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCGGAC 39357
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| || || ||| ||||||||||||||||| ||||| || || |||||||||
Sbjct 39356 ACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAGCAA 39297
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | || ||||| ||||| || | |||||||| | || | |||||||||| |
Sbjct 39296 CGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGCCGCACATTGTCCGATTATAATATT 39237
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
||||||||||| || | ||||||||
Sbjct 39236 CAAAAAGAATCCACCTTACATCTTGT 39211
>seq116
Length=862150
Score = 141 bits (156), Expect = 2e-28
Identities = 161/216 (75%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || |||||| | || |||||||||||||| | || || ||| ||||||
Sbjct 484089 CAAATATTTGTTAAAACTTTGACCGGAAAAACGATCACTTTGGAAGTAGAACCGTCAGAC 484148
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| ||| ||| || |||||||| ||||| || ||||| ||||||||
Sbjct 484149 ACTATCGAAAACGTTAAAGCAAAAATCCAGGACAAGGAAGGTATTCCTCCAGACCAGCAG 484208
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | ||||| || || |||||| | |||||||| | || | | ||||| ||| |
Sbjct 484209 CGTTTGATCTTTGCTGGCAAACAGTTGGAAGATGGCCGCACATTGTCTGATTACAACATA 484268
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139
||||| ||||| || || || | || ||| | |||
Sbjct 484269 CAAAAGGAATCTACTCTTCACTTGGTGTTGCGTCTC 484304
>seq2
Length=5618958
Score = 111 bits (122), Expect = 4e-19
Identities = 154/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| |||||||||| |||||||| || || ||||| || || | || || ||
Sbjct 3064101 AAAATGC---AAATTTTCGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAG 3064045
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
|| ||||| || || || ||||| || |||||||| |||||||| || |||||
Sbjct 3064044 CCTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCA 3063985
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094
|| || ||||| | || ||||| || || || | |||||||| | || | ||||
Sbjct 3063984 GATCAACAACGTTTGATATTCGCTGGCAAGCAATTGGAAGATGGGCGCACGTTATCCGAC 3063925
Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128
|||||| | ||||| || || || |||| ||||
Sbjct 3063924 TATAACATACAAAAGGAGTCGACCTTGCA-CTTG 3063892
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203704580236844
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |