Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq158 221 1e-52 seq502 109 6e-19 >seq158 Length=613782 Score = 221 bits (244), Expect = 1e-52 Identities = 418/602 (69%), Gaps = 10/602 (2%) Strand=Plus/Plus Query 16798 ATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTAT-AAGACGTA 16856 ||| || ||| |||||||||||| ||||| ||||| |||||| || || ||| || | Sbjct 555579 ATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCATGCCAATTAAGTCG-A 555637 Query 16857 CCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCC-TTAATAATACTA 16915 | || | || || |||||||| || || || ||| || || ||| || | | | Sbjct 555638 CTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACGGCATCTGTTATTATTTCCA 555697 Query 16916 GCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCG 16975 | | ||||| | | |||| | ||| | | |||||||||||| | || || || Sbjct 555698 AAATC-CGTTCTTTGCTCGGTTTTTGTATCAAATGTTTAAACATTAATACCGCAAATTCA 555756 Query 16976 CAATGTAATCCCTCGTCTC-TGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTT 17034 || || || || || || | || | || | ||| ||||| || || || || ||||| | Sbjct 555757 CAGTGCAAGCCTTCATCGCGTGAT-ATCATTTCATTAGAGAACGTTAAACCTGGCATTAT 555815 Query 17035 TCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGAC 17094 ||| |||||||||| ||||||||||| ||||| |||| |||||||||||| ||||| Sbjct 555816 TCCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTCCCACTAAAGAATATACCTTCGAC 555875 Query 17095 GGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA-ATCCATTTCT 17153 || || || || || | ||||| || | | || || | || ||||| Sbjct 555876 GGCAGCGAAAGCTATAACACGTTCACCGAAATTAGC-CGAATGCGATGATATCCAAGCTA 555934 Query 17154 GCACCCACTCGGCTTTTTGCTTTATGCAAT-CCATCGTTTCTATGGCCTTAAATAATTTC 17212 | |||| || || || | | ||| |||| ||| || || ||||| ||||||| | Sbjct 555935 GTGCCCATTCCGCCTTCTTC-TTAACCAATGGCATTGTCTCAATGGCATTAAATAGATAT 555993 Query 17213 TCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGT 17272 || ||||| | || | ||||| || ||||| |||| || |||||||| |||||| Sbjct 555994 TCCTTTTCTTTCTCATCTCTGATATATGTTTCGATAAGTAAACTATACATTTCCGAGTGT 556053 Query 17273 ATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC 17332 | || |||||||| || ||||| || |||||||| || ||||| | ||||||||| || Sbjct 556054 ACATTTTCCATGGCAATTTGAAACCCATAAAAGCAACGTGCTTCGGTTATTTGAACCTCT 556113 Query 17333 ACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCC 17392 | | ||||||||| ||| ||| || || || || || ||| || || ||||| ||| Sbjct 556114 TGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAGCC 556173 Query 17393 AA 17394 || Sbjct 556174 AA 556175 >seq502 Length=252103 Score = 109 bits (120), Expect = 6e-19 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 119861 CCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTATCGTTTAAGTAGATACAG 119920 || || || |||||||||||||||||||| || ||| |||| ||||| || || || Sbjct 236183 CCGACATAACCGTTGGGATCCGTTCCATCCAAACTATATCTATCATTTAAA-AG-TAGAG 236240 Query 119921 ACGCTT--AACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAtttttttAGCCCAGTACA 119978 | || || || ||| || | | |||||| | || ||||||||||| |||| Sbjct 236241 AAAATTCCAAAGCGTCTTCCGGGCTTTTAGACCATTCTAAAATCTTTTTAGCCCAATACA 236300 Query 119979 TACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAGTTGTGCGGCGTTCCATA 120038 |||| || | || ||||||||||| || || | || ||| ||||| || | |||||| | Sbjct 236301 TACGCAAAAAACCGTGCATTTTACCCTCTCGCATCAATTGCAGTTGAGCTGAGTTCCACA 236360 Query 120039 AGGGATCGTGTGTACGGGCGTGTTCTAA 120066 || |||||| |||||||| || || || Sbjct 236361 AGTCATCGTGGGTACGGGCCTGCTCGAA 236388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517520201449680