Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq158 241 1e-58 seq502 104 2e-17 >seq158 Length=613782 Score = 241 bits (266), Expect = 1e-58 Identities = 475/694 (68%), Gaps = 14/694 (2%) Strand=Plus/Plus Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-AAGTCGTA 16094 ||| || ||| |||||||||||| |||||| |||| || || || || |||||| | Sbjct 555579 ATCGGCAACATATTCTATATATTTACACATACTTTCGCTGTTCATGCCAATTAAGTCG-A 555637 Query 16095 CCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGG 16154 | || | || | ||| ||||| | || ||| || ||| || ||| | || || || Sbjct 555638 CTGGTAAGGCCTCTGTCAAAAACTCTTTTTCAATTTTAACGGCATCTGTTATTATTTCCA 555697 Query 16155 TGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGC 16214 ||| || |||| | || | | ||||||||||||| ||| || || | Sbjct 555698 AAATCCGTTCTTTGCTCGGTTTTTGTATCAAATGTTTAAACATTAATACCGCAAATTCAC 555757 Query 16215 AATGTAGTCCTTCGTCTC-TGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTT 16273 | || | ||||| || | || | || | ||| || || || ||||| ||||||||| || Sbjct 555758 AGTGCAAGCCTTCATCGCGTGAT-ATCATTTCATTAGAGAACGTTAAACCTGGCATTATT 555816 Query 16274 CCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACA 16333 || |||||||||| ||| ||||||| ||| || ||| |||||||||||| || || Sbjct 555817 CCACGTTTCTTTAGCCAAAATATCGAAGCGAAGCTCCCACTAAAGAATATACCTTCGACG 555876 Query 16334 GATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA----ATCCATTT 16389 | || ||||| || | ||||| || | |||| | | ||| ||||| Sbjct 555877 GCAGCGAAAGCTATAACACGTTCACCGAAATTAGCCG----AATGCGATGATATCCAAGC 555932 Query 16390 CTGTACCCATTCGGCTTTTTGTTTTATACAATC-CATCGTTTCTATGGCCTTAAACAATT 16448 || ||||||| || || | | ||| |||| ||| || || ||||| ||||| | | Sbjct 555933 TAGTGCCCATTCCGCCTTCT-TCTTAACCAATGGCATTGTCTCAATGGCATTAAATAGAT 555991 Query 16449 TCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGT 16508 || ||||| | ||| | ||||| || || || |||||||| |||||||| |||| Sbjct 555992 ATTCCTTTTCTTTCTCATCTCTGATATATGTTTCGATAAGTAAACTATACATTTCCGAGT 556051 Query 16509 GTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTT 16568 ||| || || ||||| || ||||| ||||| ||||| || || || | |||||| || | Sbjct 556052 GTACATTTTCCATGGCAATTTGAAACCCATAAAAGCAACGTGCTTCGGTTATTTGAACCT 556111 Query 16569 CCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACG 16628 | | ||||||||||| | | |||||||| || ||||| || ||| |||||||| | Sbjct 556112 CTTGGGAAAATCGTTCCACTAAATTCTCATTAACAATACCATCGGATGCCGCAAAAAAAG 556171 Query 16629 CCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAAT 16688 |||| | ||| ||| |||| |||| || | | || |||||| | | || Sbjct 556172 CCAAAACGTGTGAAATAAAATGACGTTCGCCATTACTTAACCGATTCCAATCGTCGATAT 556231 Query 16689 CTTTGGATATATCCACTTCTTCTGGCGTCCAAAA 16722 |||| || | || |||||||||| |||||||| Sbjct 556232 CTTTAGAGAGGTCAACTTCTTCTGCAGTCCAAAA 556265 >seq502 Length=252103 Score = 104 bits (114), Expect = 2e-17 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 119014 CCCACGTATCCGTTGGGATCTGTTCCGTCTAACTCGTACTTATCGTTTAAGTAGATACAG 119073 || || || ||||||||||| ||||| || || || |||| ||||| || || || Sbjct 236183 CCGACATAACCGTTGGGATCCGTTCCATCCAAACTATATCTATCATTTAAA-AG-TAGAG 236240 Query 119074 ACGCTT--AACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGTACA 119131 | || || || |||||| | ||| |||||| | || ||||||||||| |||| Sbjct 236241 AAAATTCCAAAGCGTCTTCCGGGCTTTTAGACCATTCTAAAATCTTTTTAGCCCAATACA 236300 Query 119132 TACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCCATA 119191 |||| ||| | ||||||||||||||||| |||| || ||||| || | |||||| | Sbjct 236301 TACGCAAAAAACCGTGCATTTTACCCTCTCGCATCAATTGCAGTTGAGCTGAGTTCCACA 236360 Query 119192 GAGGATCGTGTGTACGGGCGTGTTCTAA 119219 |||||| |||||||| || || || Sbjct 236361 AGTCATCGTGGGTACGGGCCTGCTCGAA 236388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511389302338320