Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq343 93.3 4e-14 seq394 89.7 4e-13 >seq343 Length=430003 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 28958 AAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACC 29017 |||||||||||| ||| | |||||||| || |||||||| || || ||| ||||| Sbjct 57707 AAAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACC 57648 Query 29018 CGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 |||| || | | || |||| || ||| || ||||||||| | || ||| Sbjct 57647 GTCAGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCTCCAGA 57588 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 || ||| | | || ||||| ||||| ||||||||||| || || ||||||| Sbjct 57587 CCAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTA 57528 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 |||||||||||||| || || | || |||| |||| Sbjct 57527 TAATATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACG 57489 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| ||||| ||||| | ||| |||||||||| | | || ||||| |||||| Sbjct 54384 AAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAACAACGTTTGATTTTTGCCGGCAAA 54325 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 |||||||| || || || |||||||||||||||||||||| || || | || Sbjct 54324 CAACTGGAGGACGGACGCACCTTGTCCGATTACAATATTCAGAAGGAGTCAACCTTGCAT 54265 Query 29166 ATGGTGTTACGATTACGAGGAGG 29188 |||| |||| || || || || Sbjct 54264 TTGGTCCTACGTTTGCGCGGTGG 54242 >seq394 Length=301216 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | ||||| ||||| || |||||||| || ||| |||||| | Sbjct 217246 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 217187 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | |||| ||||||| || |||||||| | || ||||||| Sbjct 217186 GATACTATTGAGAACGTTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCAA 217127 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || | | || ||||| || || || ||||||||| | || || | || || ||| Sbjct 217126 CAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATAAT 217067 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || ||||||||||| || || |||||||||| | || ||||| Sbjct 217066 ATCCAAAAGGAATCTACGCTCCATTTGGTGTTACGTCTTCGCGGAGG 217020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428315504925530