Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq343 109 5e-19 >seq343 Length=430003 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| |||||| || |||||||| ||||| ||||| || | | Sbjct 57477 CCACCGCGCAGACGTAGGACCAAATGCAAGGTTGACTCCTTCTGAATATTATAATCGGAC 57536 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | ||| | |||| ||||| || ||||| ||| |||| | | |||||||| || Sbjct 57537 AAGGTGCGTCCGTCTTCCAGTTGCTTGCCGGCAAAAATCAAACGTTGCTGGTCTGGAGGA 57596 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| ||||| ||| || | ||| |||||| || || | Sbjct 57597 ATACCTTCTTTGTCTTGAATCTTGGCTTTAACATTTTCGATAGTATCTGACGGTTCAACT 57656 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTT 21178 |||| || || || ||||| ||||| ||||| || || ||||||||||| Sbjct 57657 TCCAAAGTGATAGTTTTGCCAGTTAATGTTTTTACGAAGATTTGCATTTT 57706 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| ||| || ||||| || || || ||||| || || | || || || |||| ||| Sbjct 48411 ACCAAATGTAATGTGGATTCTTTCTGTATGTTGTAATCAGACAACGTGCGGCCGTCTTCC 48470 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 | |||||| || ||| | || | | ||| ||||| || | ||||||||||| | Sbjct 48471 AACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCCTTGTCTTGG 48530 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 || ||| ||| || | ||| |||||| | || ||||| || ||||| || Sbjct 48531 ATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTACTTCCAAAGTGATGGTTTTA 48590 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| || || || |||||||||||||| Sbjct 48591 CCGGTCAAAGTCTTAACAAATATTTGCAT 48619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422238995689016