Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq343 89.7 4e-13 seq394 87.8 1e-12 seq110 84.2 2e-11 >seq343 Length=430003 Score = 89.7 bits (98), Expect = 4e-13 Identities = 110/149 (74%), Gaps = 1/149 (1%) Strand=Plus/Minus Query 25113 AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCG 25172 ||||||||| | || || |||||| | || ||||||||| | | || || || Sbjct 45834 AAGCAAAAA-TCCAAGACAAGGAAGGTATTCCTCCAGATCAACAGCGTTTAATTTTCGCT 45776 Query 25173 GGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACT 25232 |||||||||||||||||| | || || | |||||||| || ||||||||||||||| Sbjct 45775 GGCAAACAATTGGAAGATGGCCGCACATTGTCTGATTACAACATACAAAAGGAATCTACT 45716 Query 25233 CTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||| |||| | || | || ||||| Sbjct 45715 CTTCACTTGGTACTGCGTCTCCGCGGAGG 45687 >seq394 Length=301216 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | ||||| ||||| || |||||||| || ||| |||||| | Sbjct 217246 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 217187 Query 25095 GAGACGGTGGCCGATC--TCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATC 25152 || || | | || | | ||||||||| || || |||||||| | || ||||| Sbjct 217186 GATACTATTGA-GAACGTTAAAGCAAAAA-TTCAAGACAAAGAAGGCATTCCTCCAGATC 217129 Query 25153 AACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACA 25212 |||| | | || ||||| || || || |||||||| | || || | || || | Sbjct 217128 AACAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATA 217069 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||| |||||||||||||| || || |||||||||| | || ||||| Sbjct 217068 ATATCCAAAAGGAATCTACGCTCCATTTGGTGTTACGTCTTCGCGGAGG 217020 >seq110 Length=875010 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 25030 TAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAAC 25089 ||||||||||||| || | ||||| | || |||||||| ||||| ||| || | Sbjct 86200 TAAAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGC 86259 Query 25090 CCGCAGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAG 25149 | | || || | | || ||||| |||||| ||||||||||| | || || Sbjct 86260 CTTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAG 86319 Query 25150 ATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATT 25209 |||||||| | | || || || || ||||||||||||||| ||| | | |||| Sbjct 86320 ATCAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTATCGGATT 86379 Query 25210 ACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 | || || |||||||| || || | ||| |||| Sbjct 86380 ATAACATACAAAAGGAGTCGACCTTGCACTTGGT 86413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410777144143364