Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq158 145 8e-30 seq180 109 6e-19 seq343 100 3e-16 seq394 89.7 5e-13 seq110 86.0 6e-12 >seq158 Length=613782 Score = 145 bits (160), Expect = 8e-30 Identities = 378/571 (66%), Gaps = 4/571 (1%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACA-CGAGCGAC 116713 |||| || || || || ||||| | || || || ||||| || || || | ||| ||| Sbjct 556279 AGGCGGAAGCCTCTTTTTGGACTGCAGAAGAAGTTGACCTCTCTAAAGATATCGA-CGAT 556221 Query 116714 TGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 ||| | || || | | ||| || ||||| || ||||| |||| ||||| || Sbjct 556220 TGGAATCGGTTAAGTAATGGCGAACGTCATTTTATTTCACACGTTTTGGCTTTTTTTGCG 556161 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 || ||| || || || || |||||| | || || || || | || ||||| || | Sbjct 556160 GCATCCGATGGTATTGTTAATGAGAATTTAGTGGAACGATTTTCCCAAGAGGTTCAAATA 556101 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 |||| || || ||||| || || ||||| || |||||||| || || |||||||||||| Sbjct 556100 ACCGAAGCACGTTGCTTTTATGGGTTTCAAATTGCCATGGAAAATGTACACTCGGAAATG 556041 Query 116894 TATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAAC 116953 ||| || ||||| || || | | | | | || ||| | | || || Sbjct 556040 TATAGTTTACTTATCGAAACATATATCAGAGATGAGAAAGAAAAGGAATATCTATTTAAT 555981 Query 116954 GCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGC- 117012 ||||| ||||| ||||| | || || ||||||| || ||||| || ||||| | Sbjct 555980 GCCATTGAGACAATGCCATTGGTTAAGAAGAAGGCGGAATGGGCACTAGCTTGGATATCA 555921 Query 117013 CGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTT 117072 ||| ||| ||||| || || | | || ||||| |||||||| || | || Sbjct 555920 TCGCA-TTCGGCTAATTTCGGTGAACGTGTTATAGCTTTCGCTGCCGTCGAAGGTATATT 555862 Query 117073 CTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCT 117132 |||| || || ||||| | ||||||||||| |||||||| || | ||||| || | Sbjct 555861 CTTTAGTGGGAGCTTCGCTTCGATATTTTGGCTAAAGAAACGTGGAATAATGCCAGGTTT 555802 Query 117133 GACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTT 117192 || ||| || || | || || | || || || |||| || || ||||| || Sbjct 555801 AACGTTCTCTAATGAAATGATATCACGCGATGAAGGCTTGCACTGTGAATTTGCGGTATT 555742 Query 117193 GCTGTTCAAGCATTTGGTGCAGCGACCGAGC 117223 |||| || |||||| | || ||||||| Sbjct 555741 AATGTTTAAACATTTGATACAAAAACCGAGC 555711 >seq180 Length=539930 Score = 109 bits (120), Expect = 6e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || |||||||| || |||||||| |||||||| | || |||||| || Sbjct 121605 AATATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCC 121546 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | ||| | || | || |||| ||||||||||| || || | ||| Sbjct 121545 TCGGACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGAC 121486 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||||||| | || | ||| || || || |||| || | ||||| | ||| || Sbjct 121485 CAGCAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTAT 121426 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || || || |||| | ||||| |||||||| ||| | || || Sbjct 121425 AATATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGG 121376 >seq343 Length=430003 Score = 100 bits (110), Expect = 3e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 |||||||||||| ||||||||||| | || |||||||| ||||| | || || ||| | Sbjct 57707 AAAAATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACC 57648 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | || | | ||| | || | || |||| |||||||| || || || | || Sbjct 57647 GTCAGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCTCCAGA 57588 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||||||| | || | || ||||| || ||||| |||| |||||| | ||| || Sbjct 57587 CCAGCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTA 57528 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCAT 40893 || || ||||||||| | || ||||| Sbjct 57527 TAATATTCAGAAGGAGTCAACCTTGCAT 57500 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| |||||||| || || | || || ||||| |||||| | || || || ||| Sbjct 48850 AAAATGCAGATATTCGTGAAGACATTGACTGGAAAAACTATCACCTTGGAGGTTGA-GCC 48792 Query 40747 A-CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | | | || ||||||| || |||||||| |||| | || Sbjct 48791 ATCCGATACTATTGAGAATGTTAAAACTAAAATTCAAGATAAAGAGGGTGTCCCACCAGA 48732 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||||| | |||| || ||||||||| |||| | | ||||| ||| ||||| Sbjct 48731 TCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCTGACTA 48672 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||| ||||| || | || || ||| | || || || ||| | || ||| Sbjct 48671 CAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGC 48620 >seq394 Length=301216 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || |||||||| | || || ||||||||||| | || || ||| || | Sbjct 217246 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 217187 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | || |||| | || | |||||||| |||||||| ||||| || | || || Sbjct 217186 GATACTATTGAGAACG-TTAAAGCAAAAATTCAAGACAAAGAAGGCATTCCTCCAGATCA 217128 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || | || | || || || |||||||| || | |||||| | ||||| || Sbjct 217127 ACAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATAA 217068 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| ||||| | ||||| ||| | ||||| || Sbjct 217067 TATCCAAAAGGAATCTACGCTCCATTTGGTGTTACG 217032 >seq110 Length=875010 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 |||||||||||| || || ||||| || || |||||||| || || | || || || | Sbjct 86201 AAAAATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCC 86260 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | ||| |||||| ||||||| || ||||| ||||| || | || Sbjct 86261 TTCCGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGA 86320 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 || ||||| | || | ||| || ||||| |||| || | ||| || | || || Sbjct 86321 TCAACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTATCGGATTA 86380 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || |||||| | || |||| Sbjct 86381 TAACATACAAAAGGAGTCGACCTTGCA 86407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515193915617760