Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq54 132 3e-26 seq711 82.4 5e-11 >seq54 Length=1451896 Score = 132 bits (146), Expect = 3e-26 Identities = 236/341 (69%), Gaps = 4/341 (1%) Strand=Plus/Plus Query 97122 ATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCC 97181 |||||| |||||||| ||||||| | ||| || || ||||| || || || || || Sbjct 132818 ATGGGCAATCATACACGTTAATAATGCATACGATGCTATATTAAATGGGACACCCAGCCC 132877 Query 97182 CATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACTG 97241 |||||| || | ||||| | ||||| || | || || | ||||| || || Sbjct 132878 CATATCGGCACTGCGCTGATAAAGTTGACATGACAACTCATTATTGGATACATAGAATTG 132937 Query 97242 ACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACA 97301 ||| ||| ||||| || || ||||||||||| | ||||| |||||||| | Sbjct 132938 GGCCAAGCAATGGCAGGGCGGTAAGGCCATTTTTGGTATATCTACTGGATTCCAAGAGGA 132997 Query 97302 CATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTG 97361 | | ||| | || ||| || || ||||| ||| || |||||||||| || ||||| Sbjct 132998 TAAAATCATACGTCGATCTGTGGGATTTGTAGTTATTGTCCTAATTATCTGTTTCAATTG 133057 Query 97362 ATCAACGCCTTCTCCACCATAATTGT-GC-TTAAGACCTTGATATTCTGCTCCAAAATGC 97419 ||| || ||||| |||||| | | || ||| | |||||| ||| |||||||| Sbjct 133058 ATCGACTCCTTCCGTACCATAGCTATCGCGACAAGTGC--GATATTGTGCCCCAAAATGG 133115 Query 97420 CTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTC 97460 | |||||| || || |||| || || | ||| |||||||| Sbjct 133116 CGCCATTGAAAACCGTAAATTGGCCCCAAGTCACCTTCTTC 133156 >seq711 Length=206765 Score = 82.4 bits (90), Expect = 5e-11 Identities = 131/184 (71%), Gaps = 8/184 (4%) Strand=Plus/Minus Query 97138 GTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTT 97197 ||||||| || ||| ||||||| |||||||| | || || ||||| ||||||| Sbjct 141822 GTTAATAAAGCATAACTAGCAAGATTAAAAGGTAATCCAAGAAAAATATCGCATGATCTT 141763 Query 97198 TGATATAACTGACAGGA-AAGCTTTCCATCACACACATAAAACTGACTCAATACATGACA 97256 ||||||| ||||| || ||| ||| | ||| |||||||| ||| |||| |||||| Sbjct 141762 TGATATACTTGACATGATAAGGTTTGATTTACA-ACATAAAATTGAAATAATATATGACA 141704 Query 97257 GGGGGGCAACGCCAT---TTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCT 97313 || || | | ||| |||| | ||| |||||||| ||| | || || ||||| Sbjct 141703 CGGAGGAAGAGACATGAATTTT---AAATCCCCAACATTCCAGGCAGAAATTAATATTCT 141647 Query 97314 TCTA 97317 |||| Sbjct 141646 TCTA 141643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346767407035820