Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq343 147 3e-30 seq394 141 1e-28 seq180 140 5e-28 seq110 132 7e-26 seq539 100 4e-16 seq711 98.7 2e-15 >seq343 Length=430003 Score = 147 bits (162), Expect = 3e-30 Identities = 175/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 124535 TACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGC 124594 || |||||| ||||| | |||||| | || || |||||||| || | ||| |||| | Sbjct 48851 TAAAATGCAGATATTCGTGAAGACATTGACTGGAAAAACTATCACCTTGGAGGTTGAGCC 48792 Query 124595 AAATGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653 | ||||| ||| ||| ||||||| ||||||||||||||||| ||| | ||||| | Sbjct 48791 ATCCGATACTATTGAGAATGTTAAAACT-AAAATTCAAGATAAAGAGGGTGTCCCACCAG 48733 Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713 |||||||| | | || ||||| || ||||| || || || | || ||| | || | Sbjct 48732 ATCAACAACGTTTGATCTTTGCTGGCAAACAGTTGGAAAATGGCCGCACACTCTCTGACT 48673 Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | || ||||| |||||||| || | ||||||||||||||||| || ||||| || Sbjct 48672 ACAACATTCAGAAAGAATCGACACTCCATTTGGTTTTACGTTTGCGTGGTGGCAT 48618 Score = 143 bits (158), Expect = 4e-29 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || |||| ||| |||| ||||||||||| ||| | || ||||| | Sbjct 57704 AATGCAAATCTTCGTAAAAACATTAACTGGCAAAACTATCACTTTGGAAGTTGAACCGTC 57645 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| | ||| || |||||||| ||||||||||| || || || || Sbjct 57644 AGATACTATCGAAAATGTTAAAGCCAAGATTCAAGACAAAGAAGGTATTCCTCCAGACCA 57585 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | |||||||| || || ||| | || || | || || || |||||||| Sbjct 57584 GCAACGTTTGATTTTTGCCGGCAAGCAACTGGAAGACGGACGCACCTTGTCCGATTATAA 57525 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||| || || ||||| ||||||||||| ||||| | || |||||||| ||| || Sbjct 57524 TATTCAGAAGGAGTCAACCTTGCATTTGGTCCTACGTCTGCGCGGTGGTATGCAAATTT 57466 Score = 129 bits (142), Expect = 9e-25 Identities = 119/151 (79%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 |||||||||||||| ||||| || || || ||||||||| | | |||||||| || ||| Sbjct 54384 AAAATTCAAGATAAGGAAGGAATCCCCCCAGATCAACAACGTTTGATTTTTGCCGGCAAA 54325 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| | ||||| | || || || ||||| |||||||| || || ||||| |||||| Sbjct 54324 CAACTGGAGGACGGACGCACCTTGTCCGATTACAATATTCAGAAGGAGTCAACCTTGCAT 54265 Query 124743 TTGGTTTTACGTTTACGAGGTGGTATTAAAA 124773 ||||| ||||||| || ||||||||| ||| Sbjct 54264 TTGGTCCTACGTTTGCGCGGTGGTATTTAAA 54234 Score = 113 bits (124), Expect = 7e-20 Identities = 192/272 (71%), Gaps = 6/272 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| | || || ||||| || ||| | || | ||| | Sbjct 48619 ATGCAAATATTTGTTAAGACTTTGACCGGTAAAACCATCACTTTGGAAGTAGAATCGTCG 48560 Query 124599 GATACAATTTCTAA-TTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || || ||||| || ||||| ||||| || |||||||| || || || || Sbjct 48559 GATACTATCGAAAACGTTAAAGCA-AAAATCCAAGACAAGGAAGGTATTCCTCCAGACCA 48501 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | || ||||| |||||||| || || || | || || || ||||| || Sbjct 48500 ACAGCGTTTGATCTTTGCTGGAAAACAGTTGGAAGACGGCCGCACGTTGTCTGATTACAA 48441 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 || || |||||||| || || |||||||| || ||| | || ||||| || ||| ||| Sbjct 48440 CATACAGAAAGAATCCACATTACATTTGGTATTGCGTCTCCGCGGTGGAATGCAAATATT 48381 Query 124777 CATAAAAA--TTGATTGTAAATAAATATCACT 124806 | |||| |||| || ||| || |||||| Sbjct 48380 TGTTAAAACTTTGACTGGAAA-AACCATCACT 48350 >seq394 Length=301216 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | |||||| | || ||||||||||| ||| ||||| |||| | Sbjct 217475 AATGCAGATCTTCGTGAAGACATTGACTGGCAAAACTATCACTTTAGAGGTTGAGCCGTC 217416 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| ||| | || |||||||||||||| ||||| || || || ||||| Sbjct 217415 TGACACTATTGAGAATGTCAAGGCTAAAATTCAAGATAAGGAAGGAATCCCGCCAGATCA 217356 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | | |||||||| ||||| ||||| |||||| | || || | |||||||| Sbjct 217355 GCAGCGTTTAATTTTTGCTGGAAAGCAATTGGAGGATGGCCGTACTCTTTCGGATTATAA 217296 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| |||||||||||||| || ||||||| || || || || Sbjct 217295 CATACAGAAAGAGTCAACTTTGCATTTAGTCCTACGTTTGCGTGGGGGCAT 217245 Score = 122 bits (134), Expect = 1e-22 Identities = 176/245 (72%), Gaps = 5/245 (2%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| || | ||||| ||||| || ||| |||| | ||| | Sbjct 217246 ATGCAGATCTTTGTAAAAACTTTGACAGGTAAAACCATCACTTTAGAAGTAGAACCCTCG 217187 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| || ||||| || ||||||||||| |||||||| || || || ||||| Sbjct 217186 GATACTATTGAGAACGTTAAAGCA-AAAATTCAAGACAAAGAAGGCATTCCTCCAGATCA 217128 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | |||||||| || || || | || ||| | || || || ||| ||||| Sbjct 217127 ACAGCGCTTAATTTTTGCCGGTAAGCAGCTGGAAGATGGCCGCACCTTGTCAGACTATAA 217068 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA---TTAAAAA 124774 ||| ||||| ||||| || | |||||||| |||||| | || || || | | |||| Sbjct 217067 TATCCAAAAGGAATCTACGCTCCATTTGGTGTTACGTCTTCGCGGAGGCAGATTCTAAAA 217008 Query 124775 TTCAT 124779 ||||| Sbjct 217007 TTCAT 217003 >seq180 Length=539930 Score = 140 bits (154), Expect = 5e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| |||| || ||||| ||||| || || ||| | ||| | ||| | Sbjct 121602 ATGCAGATTTTTGTAAAAACCCTAACGGGCAAGACCATCACTCTTGAGGTCGAACCCTCG 121543 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| ||||| || ||||| || ||||| || || ||||| || || Sbjct 121542 GACACTATCGAAAATGTAAAAGCCAAGATTCAGGACAAAGAGGGAATTCCACCCGACCAG 121483 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||| | | ||||| || ||||| ||||| || ||| |||| ||||| ||||||||| Sbjct 121482 CAACGATTGATTTTCGCTGGAAAGCAATTGGAAGATGGTCGCACATTGTCCGATTATAAT 121423 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||||||||||||| || || ||| | || || ||||| |||||||| Sbjct 121422 ATTCAAAAAGAATCCACATTACATCTTGTGTTGCGTTTGCGAGGTGG 121376 >seq110 Length=875010 Score = 132 bits (146), Expect = 7e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | || || || || ||||||||||| ||| | || |||| | Sbjct 86204 AATGCAAATTTTTGTTAAAACTCTTACTGGCAAAACTATTACTTTGGAAGTTGAGCCTTC 86263 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| ||| | || |||||||| ||||||||||| || || || ||||| Sbjct 86264 CGACACTATTGAAAATGTCAAGGCCAAAATTCAGGATAAAGAAGGCATTCCTCCAGATCA 86323 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | ||||| || || |||||||| || ||| | || || ||| |||||||| Sbjct 86324 ACAACGTTTGATTTTCGCTGGTAAACAATTGGAAGATGGGCGGACTTTATCGGATTATAA 86383 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || ||||| || || || ||||| ||||| | ||| | || |||||||| Sbjct 86384 CATACAAAAGGAGTCGACCTTGCACTTGGTACTTCGTCTCCGTGGTGGTAT 86434 >seq539 Length=405157 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || || |||| ||||| || | ||| |||| | ||| | | Sbjct 240626 AATGCAGATTTTTGTGAAAACGTTAACGGGCAATACCCTTACTTTAGATGTCGAACCGAC 240567 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| || | ||| || ||||| ||||| || ||||| ||||| |||| Sbjct 240566 CGATACTATTGAAAAGATTAAAAGCAAGATTCAGGATAAGGACGGTATTCCACCAAATCA 240507 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | | |||| ||| || || || ||||| |||||| | || || | ||||| Sbjct 240506 ACGCCGATTGATTTATGCCGGCAAGCAGTTAGAAGATAGTTGCACGCTAACGAACTATAA 240447 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTA 124767 || ||||| | | ||| | ||||||||||||||||||| || |||| Sbjct 240446 CATACAAAAGGGCGCGACTCTCCATTTGGTTTTACGTTTACTTGGCGGTA 240397 >seq711 Length=206765 Score = 98.7 bits (108), Expect = 2e-15 Identities = 161/228 (71%), Gaps = 7/228 (3%) Strand=Plus/Minus Query 205450 TGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCC 205509 ||||||| ||||| || |||||| ||||||||||| |||||| |||| || | | Sbjct 141837 TGTGCAAACATATGCGTTAATAAAGCATAACTAGCAAGATTAAAAGGTAATCCAAGAAAA 141778 Query 205510 ATATCAGCTGATCTTTGATACATTTGACATG-TAAGATATTTATTATTAATTACATGAAA 205568 ||||| |||||||||||| | |||||||| |||| | | ||| | |||| ||| Sbjct 141777 ATATCGCATGATCTTTGATATACTTGACATGATAAG----GTTTGATTTACAACATAAAA 141722 Query 205569 TTGTACAAAACAATGACAAGGTGGTATAACCAT-ATTTTCAACATCTATAGGATTCCAGG 205627 ||| | || |||||| || || | | ||| | ||| || ||| | |||||||| Sbjct 141721 TTGAAATAATATATGACACGGAGGAAGAGACATGAATTTTAA-ATCCCCAACATTCCAGG 141663 Query 205628 CTGTTAATATTATATTTCTAGATTCAGGtttattttttattttattta 205675 | | | || ||| |||||||||| || | ||||| | || ||||| Sbjct 141662 CAGAAATTAATATTCTTCTAGATTCCGGAGTGTTTTTCAATTGATTTA 141615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755418925996800