Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glossina_20palpalis_20gambiensis_20[genbank_20GCA_5F000818775.1_2020 15-01-15] 3,926 sequences; 380,104,241 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq394 111 2e-19 seq343 111 2e-19 seq180 96.9 5e-15 seq110 95.1 2e-14 seq334 86.0 9e-12 >seq394 Length=301216 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 || ||||| ||||| || ||||| ||| |||||||| |||||||| | || ||| || Sbjct 217266 ACTAAATGCAAAGTTGACTCTTTCTGTATGTTATAATCCGAAAGAGTACGGCCATCCTCC 217325 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| |||||||||||||| || | |||||||| || || |||||||| |||||||| Sbjct 217326 AATTGCTTTCCAGCAAAAATTAAACGCTGCTGATCTGGCGGGATTCCTTCCTTATCTTG 217384 >seq343 Length=430003 Score = 111 bits (122), Expect = 2e-19 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | || | |||||||||||||| || |||||||| ||| || ||||| | Sbjct 48391 TTCCACCGCGGAGACGCAATACCAAATGTAATGTGGATTCTTTCTGTATGTTGTAATCAG 48450 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | || | || || || || |||||||||||||| ||||| | || || || |||| Sbjct 48451 ACAACGTGCGGCCGTCTTCCAACTGTTTTCCAGCAAAGATCAAACGCTGTTGGTCTGGAG 48510 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| ||||| || ||||| |||||| || ||||| Sbjct 48511 GAATACCTTCCTTGTCTTGGATTTTTGCTTTAACGTTTTCGATAGTATCCGACGATTCTA 48570 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 |||| | ||||| |||||||| || || || |||| ||||||||||| Sbjct 48571 CTTCCAAAGTGATGGTTTTACCGGTCAAAGTCTTAACAAATATTTGCAT 48619 >seq180 Length=539930 Score = 96.9 bits (106), Expect = 5e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 146050 TCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGA 146109 |||||||| | | || || | |||||| || |||||||| ||||||||||| || Sbjct 121375 TCCACCTCGCAAACGCAACACAAGATGTAATGTGGATTCTTTTTGAATATTATAATCGGA 121434 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || | | ||| || ||||| |||||||| |||||||||| |||||| || || || Sbjct 121435 CAATGTGCGACCATCTTCCAATTGCTTTCCAGCGAAAATCAATCGTTGCTGGTCGGGTGG 121494 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||| ||||| || || Sbjct 121495 AATTCCCTCTTTGTCCTG 121512 >seq110 Length=875010 Score = 95.1 bits (104), Expect = 2e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 |||||| || || || || || || ||| |||||||| || | ||| | | ||| || Sbjct 86414 TACCAAGTGCAAGGTCGACTCCTTTTGTATGTTATAATCCGATAAAGTCCGCCCATCTTC 86355 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| ||||| |||||||| | ||| ||||| |||||||| ||||||||||| || Sbjct 86354 CAATTGTTTACCAGCGAAAATCAAACGTTGTTGATCTGGAGGAATGCCTTCTTTATCCTG 86295 >seq334 Length=279301 Score = 86.0 bits (94), Expect = 9e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 209054 GTAAAAGGAAAAATAGTTGGATTATCTAAAGGATTACACGGATTTCATGTTCATGAATAT 209113 |||| ||| | ||| |||||||||||| |||||||| || ||||||||||| |||| | Sbjct 48710 GTAACTGGAGAGATAAATGGATTATCTAAGGGATTACATGGCTTTCATGTTCACGAATTT 48769 Query 209114 GGTGATGTGAGTAATGGTTGTACATCAGCAGGAGAACATTTTAATCCATATAATAGACAA 209173 || || | ||| || ||||| || || || | ||||||||||| | || | | | Sbjct 48770 GGGGACAATACTAACGGCTGTACTTCTGCCGGTGCGCATTTTAATCCTTGCAAAAAAGAG 48829 Query 209174 CATGGAG 209180 ||||||| Sbjct 48830 CATGGAG 48836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743489911441920